PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00059.1.p
Common NameMIMGU_mgv1a023212mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARR-B
Protein Properties Length: 531aa    MW: 60118.2 Da    PI: 5.099
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.41.3e-27220273155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr+ W+++LHe+F++av+q+ Gs+kA+Pk+ile+m+v+gLt+e+v+SHLQkYRl
  Migut.N00059.1.p 220 KPRVMWSKKLHEQFISAVNQI-GSDKAVPKKILEVMNVPGLTRENVASHLQKYRL 273
                       79*******************.********************************8 PP
2Response_reg76.31.1e-25321401109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+p+ +++l ++l++  y ev+ +  +e alell++++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++++ + ++
  Migut.N00059.1.p  32 VLVVDDDPTCLRILDKMLRSCLY-EVTKCNRAEIALELLRDEKnsFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKKLVMKGVN 122
                       89*********************.***************888778**********************6644.8******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+++e+l +
  Migut.N00059.1.p 123 HGACDYLIKPVSMEALKN 140
                       **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.6E-1528527IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.1E-4229169No hitNo description
SuperFamilySSF521723.27E-3529160IPR011006CheY-like superfamily
SMARTSM004487.8E-3030142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.75231146IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.5E-2332140IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.42E-2833145No hitNo description
PROSITE profilePS5129410.429217276IPR017930Myb domain
SuperFamilySSF466891.79E-19218277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-28218278IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-24220273IPR006447Myb domain, plants
PfamPF002498.6E-8223272IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MRIELNPMPF ASSSNSGCEI VVPDQFPAGL RVLVVDDDPT CLRILDKMLR SCLYEVTKCN  60
RAEIALELLR DEKNSFDIVI SDVHMPDMDG FKLLEHVGLE MDLPVIMMSA DDSKKLVMKG  120
VNHGACDYLI KPVSMEALKN IWQHVVHRKK HEWARKNIQQ SRTAAEEDVE ELHQKQPSNE  180
EVGYYSSSSA NNEGSLRSSN ERKDEEDECE ERDCKSKPKK PRVMWSKKLH EQFISAVNQI  240
GSDKAVPKKI LEVMNVPGLT RENVASHLQK YRLCLRKMSG EIQNGLGHSF VSSTDSTFGP  300
LTFASSSQPR QQSLAPVSAS LNVHQRNIFT YENPTTRFVQ GQQRHFNSDN EVNFLRGIPT  360
YRNLTNIPFG NMNNRRDSNS LLTEMVQTQQ RSQISNNGIG CNNLSNHSFS APTLFSGIAS  420
VTSLPHNLEP ETNASRGFVP SFDVFEDLNQ NRTDEWDLQI VEPGFQSVNN SNIGQQQNIL  480
SPADNLFSFQ NSLFTEHDEF MNTYLDQNQQ DVLSESEFDF NEYQLDSLPL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-20219279464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00059.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840536.10.0PREDICTED: two-component response regulator ARR2-like isoform X2
SwissprotQ9ZWJ91e-128ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A022RZU50.0A0A022RZU5_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-124response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]