PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00056.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 332aa    MW: 37388.1 Da    PI: 4.8891
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +grWT+eEde+lv+++k  G g+W++ ++  g+ R++k+c++rw +yl
  Migut.N00056.1.p 14 KGRWTAEEDEKLVNYIKANGDGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding53.55.6e-1767112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T +E+e +v+++k lG++ W+ Ia+ ++ gRt++++k++w+++l
  Migut.N00056.1.p  67 RGNFTVDEEETIVKLHKSLGNR-WSIIASNLP-GRTDNEIKNYWNSHL 112
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.553961IPR017930Myb domain
SuperFamilySSF466895.62E-2811108IPR009057Homeodomain-like
SMARTSM007172.1E-121363IPR001005SANT/Myb domain
PfamPF002496.0E-151461IPR001005SANT/Myb domain
CDDcd001674.71E-91661No hitNo description
PROSITE profilePS5129425.57262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-2565116IPR009057Homeodomain-like
SMARTSM007172.5E-1666114IPR001005SANT/Myb domain
PfamPF002496.8E-1567112IPR001005SANT/Myb domain
CDDcd001671.30E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRSPCCEKT GLKKGRWTAE EDEKLVNYIK ANGDGSWRSL PKNAGLLRCG KSCRLRWINY  60
LKEDVKRGNF TVDEEETIVK LHKSLGNRWS IIASNLPGRT DNEIKNYWNS HLSRSIYRFR  120
SINGHESTLS ASDMINIAKK RTGRICRKNA KKYHNSNSNS HSASPESENI SNSVEVVHDE  180
GPGDKVSVDH MDNLSERNDG RESINGSFFS DDLLLFTEEW ATTTTTNNNN NDNNNNNNNN  240
NAAALIVAPT EEVIRAEKRG PMEVDEDTLM ECENNMLNTS DDCGAHLLYE CSTFSPIVSN  300
FADDFLQWDY NCGGGEQLDL WNEDGDMLIW S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25121165108B-MYB
1h8a_C9e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00056.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2244532e-41KT224453.1 Erythranthe lewisii light areas 1 (LAR1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840497.10.0PREDICTED: transcription repressor MYB6-like isoform X1
TrEMBLA0A022S0T80.0A0A022S0T8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-69myb domain protein 111