PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00008.1.p
Common NameLOC105960367, MIMGU_mgv1a000941mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 938aa    MW: 104357 Da    PI: 7.1902
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP119.41.7e-37122199178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +C ve+C++dls++ eyhrrhkvC+vhsk++++lv +  qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrr+++ 
  Migut.N00008.1.p 122 VCLVEDCKVDLSNVSEYHRRHKVCDVHSKSTSALVGNAVQRFCQQCSRFHVLVEFDEGKRSCRRRLADHNKRRRRTHV 199
                       6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-29116184IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.222120197IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-35121201IPR004333Transcription factor, SBP-box
PfamPF031109.1E-27123196IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.203.8E-9689831IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.44E-8722827IPR020683Ankyrin repeat-containing domain
CDDcd002042.30E-7726825No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MEKKLGGKRD NPNGQVESDS KASAGWDRKD WTWDGHLFKA VKNGDSNGII SSGSDEVLLG  60
DERELDEHRK CADVNVHVNE EAGGSINLNL GEQVFPLMVD KVEERTRKKT KVSGTPSPSN  120
AVCLVEDCKV DLSNVSEYHR RHKVCDVHSK STSALVGNAV QRFCQQCSRF HVLVEFDEGK  180
RSCRRRLADH NKRRRRTHVE DAVSPTSTND VQGSNYSLTT LLNILSNIQA SSSDQARDGD  240
LLSNIIRELA SLAGSTNPAG LLQNEGTSMG TAVKESTILA GPGVSIPSSI FTQQSTLTDN  300
AQGGFTHNAS APQKNPLLFP KESSNLTKEN ASDTAVGRVK LNNFDLNNVY DASQDCMEDL  360
HDNLAPEKVG NASTAVPLGL CRDSQRFSRA HNRENLVSSP SQSPSSTSGK IQICTDRIDF  420
KLFGKDPSHI PLVMRKQILD WLSIRPTDME SYIKPGCIIL TVYICMDKNA WEELHCNLNR  480
TLKRLLDSSN DSFWRTGWIY TRVRHHATFV YDGQVVLDTP LPLKNHQRCR ISSITPVAVS  540
LSKPAHFVVK GFNLSRSTSR LLCALNGEYL VEENCADLRR EADSDEEIHQ SLSFSCDMPN  600
TVGRGFIEVE EHGVSSSSFF PFIVAEEDVC SEICTVEKIV GASEALEFVH EMGWLLHRKS  660
LMFRLGGSSK DVDRFPLKRF RWLIEFAMEH EWCAVVKKLL SIMFDGSVDA GKHSSIEVAL  720
MDIGLLHQAV GKKKSRSMVK FLLEHKEKLI VEEGGYLFRP DRVGPGGLTP LHVAASLDSC  780
EDVLDALTED PLSMGIEAWK NARDSTGLTP HDYACLRGHY SYIDLVERKK AQGRKEEYVV  840
VDIPAAAGKL EEKKVKCMET EKKYNYNYCR ECEKQKIIIR KGYGNASSSV RIYRPAMLSM  900
VAIAAVCVCA ALLFKSSPHV MFSLRPFSWE HLKFGSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-251221961084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191197KRRRRTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012839980.10.0PREDICTED: squamosa promoter-binding-like protein 1
TrEMBLA0A022RZP50.0A0A022RZP5_ERYGU; Uncharacterized protein
STRINGMigut.N00008.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18712466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1