PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M02027.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 356aa    MW: 39942.6 Da    PI: 6.6686
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M02027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171966148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEde+lv  ++ +G g+W+++++  g+ R++k+c++rw +yl
  Migut.M02027.1.p 19 RGLWSPEEDEKLVSHITAHGHGCWSSVPKLAGLERCGKSCRLRWINYL 66
                      788*******************************************97 PP
2Myb_DNA-binding53.36.2e-1772115146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg +T+eE+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Migut.M02027.1.p  72 RGCFTEEEEMTIIDVHRILGNR-WSQIAKHLP-GRTDNEVKNFWNS 115
                       899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-251069IPR009057Homeodomain-like
PROSITE profilePS5129417.6041466IPR017930Myb domain
SuperFamilySSF466891.27E-2817113IPR009057Homeodomain-like
SMARTSM007177.6E-131868IPR001005SANT/Myb domain
PfamPF002491.3E-141966IPR001005SANT/Myb domain
CDDcd001675.68E-112266No hitNo description
PROSITE profilePS5129425.52167121IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2570121IPR009057Homeodomain-like
SMARTSM007171.6E-1571119IPR001005SANT/Myb domain
PfamPF002492.7E-1572115IPR001005SANT/Myb domain
CDDcd001672.17E-1275114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MIINKIVHHQ CCSKEKVKRG LWSPEEDEKL VSHITAHGHG CWSSVPKLAG LERCGKSCRL  60
RWINYLRPDV KRGCFTEEEE MTIIDVHRIL GNRWSQIAKH LPGRTDNEVK NFWNSCIKKK  120
LLSQGLDPTT HNLLLSSSSS NNIITTFSVH QHSSSSTAPP PNIIINNNSR STPPILNNND  180
DLLIINDPAS SSTTLSGLVL TNNSTQTTTT PSMMFSSPSS TCGFTTSTSL LNHHPYNFDN  240
IIHNLDHYSG RCLVDPLPNA LQQQHQQISS CGLLYYNHHD DDDQLSILLN SSGIIHHDHQ  300
EPDYHQPNTN IHTFHGSITS HFDFDFVDSA FILPPPVYTT TTTHLDDDQR LAWDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30191217108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M02027.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829693.10.0PREDICTED: transcription factor WER-like
SwissprotQ8LPH67e-70MYB86_ARATH; Transcription factor MYB86
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-76myb domain protein 67