PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01996.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 721aa    MW: 82953.3 Da    PI: 9.1285
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01996.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.99.3e-2511111189
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                       +fY++YA +vGFs  +++s++s+ +g++++++fvCs++g+++ +  +            +++ r +r+ ++t+Cka+++vk ++dg+w+++++
  Migut.M01996.1.p  11 EFYKKYAISVGFSAIIKASRRSRISGKFIDAKFVCSMYGSKRGTCPSensehtdvavakKKRGRINRSWSKTDCKACMHVKIRQDGRWVISSF 103
                       6**************************************98865544567899**9988888888**************************** PP

              FAR1  82 eleHnHel 89 
                         eHnH+l
  Migut.M01996.1.p 104 IGEHNHDL 111
                       ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-2211112IPR004330FAR1 DNA binding domain
PfamPF105512.2E-27201292IPR018289MULE transposase domain
PROSITE profilePS509669.606451487IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-5451483IPR007527Zinc finger, SWIM-type
SMARTSM005755.2E-4462489IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MEFESKEHAF EFYKKYAISV GFSAIIKASR RSRISGKFID AKFVCSMYGS KRGTCPSENS  60
EHTDVAVAKK KRGRINRSWS KTDCKACMHV KIRQDGRWVI SSFIGEHNHD LLCQNNLDAP  120
NAIRVRRKQM QNEITGSRSS GLRLRFREGD VQVMLEYFSC MQDENPYFFY AVDLNREQRL  180
KNVFWVDAKS RVDYRSFDDA VLFDTMYMKN ESKLPFVPFI GMNNHFQPLL LGCAFVSEES  240
KSSYVWLIRA WVKSMHGQAP RVILTDQDSV LKEAIAEVLP GSRHCFCLWH ILGKMEEKLG  300
YVIRQHENFV NKFYKCILKS QTETRFEKRW WKLVDRFDLG TDKWIQSLYD DRIRWVPTFM  360
KDLFLAGLSS TQRPESVTSL LDKSLLRKTS VKEFLHQYNI TLQEKIESPS PYGKQMSTIY  420
THAVFKKFQV EVLGVVACHP KLEGKDENRA YNVTWNEKTS DSSCMCFLFE YNGFLCRHVM  480
IVLQISGVNN IPAKYILKRW TKDAKNGDSM KQVDSAGSKN LRYTDLCQLA CKVGDEGSLC  540
QETFIIASTA LEEAIRKCES INSSLQPLLG AISPSNDVLR EFEEVTRARL TSKTKKEGIR  600
KEKGYLNVRS STLDFSHGSQ ENARGIIGQV GQQLNSTAPC SDVHPASLER LYQMVQCDIT  660
GHRKFQYFQQ NGTIIILMNN IFFIMERLIF TFACLQGQLQ FISQNVQSSL LVQPNMQVGI  720
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01996.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829720.10.0PREDICTED: LOW QUALITY PROTEIN: protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLA0A022RV760.0A0A022RV76_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.M01996.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.10.0FAR1 family protein