PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M01935.2.p | ||||||||
Common Name | LOC105948872, MIMGU_mgv1a014809mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LSD | ||||||||
Protein Properties | Length: 177aa MW: 18254.2 Da PI: 8.3375 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 45.4 | 1.4e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt+LsYPrGA++V+CalC+ V Migut.M01935.2.p 7 CGGCRTVLSYPRGATNVCCALCNVV 31 ***********************98 PP | |||||||
2 | zf-LSD1 | 36.5 | 8e-12 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+ rGA+ VRC++C+tV Migut.M01935.2.p 46 CGGCHTLLMHARGATTVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 47.7 | 2.5e-15 | 94 | 118 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+G+psV+Ca+C+++ Migut.M01935.2.p 94 CGNCHTMLMYPAGSPSVKCAICHFI 118 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.6E-13 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 1.84E-6 | 6 | 119 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 6.0E-12 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.90.10.10 | 4.5E-6 | 20 | 117 | No hit | No description |
TIGRFAMs | TIGR01053 | 1.2E-12 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.5E-11 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.4E-12 | 91 | 121 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-13 | 94 | 118 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MQSQIVCGGC RTVLSYPRGA TNVCCALCNV VTAVPPAGME MAQLICGGCH TLLMHARGAT 60 TVRCSCCHTV NRVPDIRSAT PPPPPPNNVA HVNCGNCHTM LMYPAGSPSV KCAICHFITA 120 VNTGDARIPI PARRPASTST STATAHSQSQ TVVVQNPMTV DESGKLVSNV VVGVTT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M01935.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827577.1 | 1e-123 | PREDICTED: protein LSD1 isoform X2 | ||||
Swissprot | Q6ASS2 | 6e-62 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A022PU86 | 1e-122 | A0A022PU86_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-58 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.M01935.2.p |
Entrez Gene | 105948872 |
Publications ? help Back to Top | |||
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