PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M01838.1.p | ||||||||
Common Name | MIMGU_mgv1a026531mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 469aa MW: 50998.9 Da PI: 6.6444 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.6 | 1.5e-05 | 359 | 397 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L A+eYIk L Migut.M01838.1.p 359 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSDAIEYIKFL 397 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.366 | 348 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-11 | 358 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.31E-6 | 358 | 402 | No hit | No description |
SMART | SM00353 | 0.006 | 359 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-9 | 362 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MADEFHLGSG NWWDSNNTSR NRFDGGATPP VSISTTLNSI ASFGWPTEMV EMKPSGGSQL 60 LQGGAHDQSS AAAAACGGGL ANPNLQMMGL GLSSHQGIDW NQTLFRGEKA ESSFRSMLEE 120 DMSSNTAGGF EQSGATTQEQ WRSQKVYSDG SPAAAEEESS LNDYKQINIH RGFSLDVHQH 180 HHHHQQLQFS HQASSNDSTI TTSHNLNNSG STFPVDSAAA YGLLLSENQP MNYQYPSGGY 240 GGGASDIIPS WNKFPQFLRQ SPPPKQQPPP PASSGSHLHF TNNAPFWNAS SPASAMSEAA 300 RSSFFPAALQ TQIPPSFDEK PKVTSEARES STTTKKNNTE TSNKRPRNET PNPLPAFKVR 360 KEKMGDRITA LQQLVSPFGK TDTASVLSDA IEYIKFLHEQ ISALSDPYMK NPASTHHHQK 420 SEKSKDQEGP RQDLRNRGLC LVPVSSTFPV AHETTVDFWT PTFGGSFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M01838.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827622.1 | 0.0 | PREDICTED: transcription factor bHLH123-like isoform X1 | ||||
TrEMBL | A0A022PTR0 | 0.0 | A0A022PTR0_ERYGU; Uncharacterized protein | ||||
STRING | Migut.M01838.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 2e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.M01838.1.p |