PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01823.2.p
Common NameLOC105948853, MIMGU_mgv1a003912mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 556aa    MW: 62406.2 Da    PI: 6.4314
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01823.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.85.9e-1291855541373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++cA+a++++  ++ ++l++  + ++s +g+p+qRl ay+ e+L ar  +s++++y++l+++e +   s++ l+++++++e++P+lkf
  Migut.M01823.2.p 185 LKQLLVACARALHENRIAEFERLVELARANVSISGEPIQRLGAYLIEGLVARKESSGTNIYRTLKCNEPD---SKDLLNYMHILYEICPYLKF 274
                       689******************************************************************9...99****************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       ++++aN aI ea ++e+r+Hi+Df+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s+  + e l+ +++rLa + e++++p+ef++ +  
  Migut.M01823.2.p 275 GYMAANGAIAEACKNEDRIHIVDFQIAQGTQWMTLLQALAARPSGPPHVRITGIDDPVSKyaRGEGLSLVEKRLAAISEKFKIPVEFHA-IPV 366
                       *********************************************************999999**************************.588 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                          d++ e+L+v++gEalaVn+ lqlh+++desv+++++rd +L++v+slsPkvv++veqe+++n+++F++rf+e+l+yysa+f+s++++++r
  Migut.M01823.2.p 367 FAPDITKEMLDVRQGEALAVNFPLQLHHTPDESVDVTNPRDGLLRMVRSLSPKVVTLVEQESNTNTAPFVQRFVETLDYYSAIFESIDVTMGR 459
                       889999*************************************************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       + +eri+vE+++l+r+ vn++aceg+er+erhe l+kWr+r+++aGF++ pls ++++ +  llr ++ + y++ e++g ++lgWkdr+Lvs+
  Migut.M01823.2.p 460 DRKERINVEQHCLARDMVNIIACEGKERVERHELLGKWRSRFMMAGFRQFPLSGYVNSVIGGLLRSYS-EHYTLVEKDGGMLLGWKDRNLVSA 551
                       ********************************************************************.55********************** PP

              GRAS 371 SaW 373
                       SaW
  Migut.M01823.2.p 552 SAW 554
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.222159536IPR005202Transcription factor GRAS
PfamPF035142.0E-126185554IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MDSRYSGYSY SSSGTDLPYS SYPAVSSIPT RLLKFDSRNS PNSPLSTHFE SETLTPLSDS  60
QGSTDNLSET TPSSNSSLDY STYLQQSRTS HTPYFPPNAN NNNNSNNIRH ALLELESALM  120
APDLEEEVTT SGRSSRSRAW SQENQTESPH HHHSFDQSHL EKRRKGMEDD FPPPPHVVVP  180
PPNNLKQLLV ACARALHENR IAEFERLVEL ARANVSISGE PIQRLGAYLI EGLVARKESS  240
GTNIYRTLKC NEPDSKDLLN YMHILYEICP YLKFGYMAAN GAIAEACKNE DRIHIVDFQI  300
AQGTQWMTLL QALAARPSGP PHVRITGIDD PVSKYARGEG LSLVEKRLAA ISEKFKIPVE  360
FHAIPVFAPD ITKEMLDVRQ GEALAVNFPL QLHHTPDESV DVTNPRDGLL RMVRSLSPKV  420
VTLVEQESNT NTAPFVQRFV ETLDYYSAIF ESIDVTMGRD RKERINVEQH CLARDMVNII  480
ACEGKERVER HELLGKWRSR FMMAGFRQFP LSGYVNSVIG GLLRSYSEHY TLVEKDGGML  540
LGWKDRNLVS ASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6219255426378Protein SCARECROW
5b3h_A3e-6219255425377Protein SCARECROW
5b3h_D3e-6219255425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01823.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827553.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A022PTS40.0A0A022PTS4_ERYGU; Uncharacterized protein
STRINGMigut.M01823.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-175GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]