PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.M01571.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

GRAS

Protein Properties

Length: 391aa MW: 43908.7 Da PI: 6.8583

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.M01571.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	334.1	2.6e-102	52	364	1	317
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPil 91 +++lL++cAe +s +dl++a++l++ ls ++sp+gd+++Rl++ ft+AL+ rl+r ++ +++ + +t+ + + +++ +++v+P++ Migut.M01571.1.p 52 MRQLLISCAELISRSDLSAAHRLISILSSNSSPYGDSTERLVHQFTRALSLRLTRYTTAAAASTSIISTTIAGrdDALVQSSYLSLNQVTPYI 144 589**************************************************776666666555554433213333445555**** PP GRAS 92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 +fs+ltaNqaIlea++g+ +++Hi+Dfdi++G+QWp+L+qa a+R + p+lRiTg gs + e l++tg+rLakfA++lg++f+f++l+ Migut.M01571.1.p 145 RFSQLTANQAILEAIDGAhHAIHILDFDIMHGVQWPPLMQAVAER-YPLPTLRITGTGS----DLEILRRTGDRLAKFAHSLGLRFQFHPLIL 232 *************98999******************9.999******....9***********************77 PP GRAS 184 krledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 ed ++ + p+E+laVn+v+ lhrll+++ l+ +L+ +k +sP+vv+v+e+ea+hn++ F +rflea+++y+a+fdslea+ Migut.M01571.1.p 233 LPGEDPisVASSVLLLPDETLAVNCVHYLHRLLRDRDRLAL----FLHRIKAMSPRVVTVAEREANHNHPIFQQRFLEAVDHYAAVFDSLEAT 321 75554322345667889************77777777....******************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWre 317 lp++s+er vE+ ++grei ++va+eg++rrerhe++++W+ Migut.M01571.1.p 322 LPPNSRERLAVEQIWFGREIADIVAAEGESRRERHERFRSWEV 364 ***************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.222	26	390	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.8E-100	52	364	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010223	Biological Process	secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MLGSFGGSSS HEVDVDVDAD QDNSSPPNAY LHHHRHQIQP RSNFAASPSL QMRQLLISCA 60 ELISRSDLSA AHRLISILSS NSSPYGDSTE RLVHQFTRAL SLRLTRYTTA AAASTSIIST 120 TIAGRDDALV QSSYLSLNQV TPYIRFSQLT ANQAILEAID GAHHAIHILD FDIMHGVQWP 180 PLMQAVAERY PLPTLRITGT GSDLEILRRT GDRLAKFAHS LGLRFQFHPL ILLPGEDPIS 240 VASSVLLLPD ETLAVNCVHY LHRLLRDRDR LALFLHRIKA MSPRVVTVAE REANHNHPIF 300 QQRFLEAVDH YAAVFDSLEA TLPPNSRERL AVEQIWFGRE IADIVAAEGE SRRERHERFR 360 SWEVITLHII NDSFFLGWQN HPLFSVSSWH *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MLGSFGGSSS HEVDVDVDAD QDNSSPPNAY LHHHRHQIQP RSNFAASPSL QMRQLLISCA  60
ELISRSDLSA AHRLISILSS NSSPYGDSTE RLVHQFTRAL SLRLTRYTTA AAASTSIIST  120
TIAGRDDALV QSSYLSLNQV TPYIRFSQLT ANQAILEAID GAHHAIHILD FDIMHGVQWP  180
PLMQAVAERY PLPTLRITGT GSDLEILRRT GDRLAKFAHS LGLRFQFHPL ILLPGEDPIS  240
VASSVLLLPD ETLAVNCVHY LHRLLRDRDR LALFLHRIKA MSPRVVTVAE REANHNHPIF  300
QQRFLEAVDH YAAVFDSLEA TLPPNSRERL AVEQIWFGRE IADIVAAEGE SRRERHERFR  360
SWEVITLHII NDSFFLGWQN HPLFSVSSWH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-48	59	389	26	378	Protein SCARECROW
5b3h_A	2e-48	59	389	25	377	Protein SCARECROW
5b3h_D	2e-48	59	389	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.M01571.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012848381.1	0.0	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-108	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A022QFQ1	0.0	A0A022QFQ1_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.M01571.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11298	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	2e-83	GRAS family protein

Link Out ? help Back to Top
Phytozome	Migut.M01571.1.p

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]