PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.M01542.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 145aa MW: 16412.4 Da PI: 7.7924

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.M01542.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.6	1.8e-37	5	105	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C++dC+++pyfp+++p++fa+vhk++Gasnv k+l++lp + r++a+++l+yeA r++dPvyG+v+ +++l +++++++ + Migut.M01542.1.p 5 RCAACKHLRRRCPSDCIFSPYFPSNNPQRFAFVHKIYGASNVGKILQDLPVNLRSKAADTLCYEASRRIEDPVYGVVRELTNLDEEIQKAHCQ 97 6****************************************************************************************** PP DUF260 94 lallkeel 101 la++++++ Migut.M01542.1.p 98 LARIRAQI 105 999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.753	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-36	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MNSSRCAACK HLRRRCPSDC IFSPYFPSNN PQRFAFVHKI YGASNVGKIL QDLPVNLRSK 60 AADTLCYEAS RRIEDPVYGV VRELTNLDEE IQKAHCQLAR IRAQIAVIQA RDEVDNVNNP 120 NFFPPQNDVS NSTSFNYDLS AWFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-30	3	100	9	113	LOB family transfactor Ramosa2.1
5ly0_B	3e-30	3	100	9	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.M01542.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012848658.1	1e-104	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	9e-44	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A022QJ18	7e-90	A0A022QJ18_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.M01542.1.p	1e-103	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	5e-41	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Migut.M01542.1.p