PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01293.1.p
Common NameLOC105968841, MIMGU_mgv1a002017mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 727aa    MW: 79932.6 Da    PI: 5.6416
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01293.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598e-1960115156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++e+e++F+++++p+ ++r+eL ++l L+  qVk+WFqN+R+++k
  Migut.M01293.1.p  60 KKRYHRHTQHQIQEMESFFNECPHPDDKQRKELGRRLALEPLQVKFWFQNKRTQMK 115
                       688999***********************************************998 PP
2START215.51.9e-672454661206
                       HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
             START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                       ela +a++el+++a+++ep+W  ss     e + ++e+ ++f+++ +      ++ea+r+s+vv+m++++lve+l+d++ qW++ +a    +a
  Migut.M01293.1.p 245 ELAVAAMEELIRMAQSGEPLWIPSSdincgELLCEEEYSRIFPRGIGpkplgLKSEASRESAVVIMNHVNLVEILMDVN-QWTNVFAsivsRA 336
                       57899********************9999999999*******99999********************************.************* PP

                       EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
             START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                        tlev+s+g      galq+m+ae+q++splvp R+ +++Ry++q+++g+w++vdvS+d+ ++ +    + R++++pSg+li++++ng+skvt
  Migut.M01293.1.p 337 VTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYYIRYCKQHSDGTWAVVDVSLDNLRPSS----ISRCRRRPSGCLIQELPNGYSKVT 425
                       **************************************************************965....8*********************** PP

                       EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       w+ehv+ ++r +h+++++lv+sgla+gak+wvatl+rqce+
  Migut.M01293.1.p 426 WIEHVEIDDRAVHSIYKPLVNSGLAFGAKRWVATLDRQCER 466
                       ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2142115IPR009057Homeodomain-like
SuperFamilySSF466894.18E-1842117IPR009057Homeodomain-like
PROSITE profilePS5007116.09957117IPR001356Homeobox domain
SMARTSM003894.9E-1658121IPR001356Homeobox domain
PfamPF000461.6E-1660115IPR001356Homeobox domain
CDDcd000861.44E-1660118No hitNo description
PROSITE profilePS5084846.877236469IPR002913START domain
SuperFamilySSF559615.5E-40236468No hitNo description
CDDcd088754.34E-127240465No hitNo description
SMARTSM002349.9E-67245466IPR002913START domain
PfamPF018522.4E-56246466IPR002913START domain
Gene3DG3DSA:3.30.530.206.5E-6342466IPR023393START-like domain
SuperFamilySSF559613.35E-26486718No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MFQPNMFDSH HHLLDMGHNK TPENEMDLIR DDDYESKSGT DIMEAPSGDE QDPNQRPNKK  60
KRYHRHTQHQ IQEMESFFNE CPHPDDKQRK ELGRRLALEP LQVKFWFQNK RTQMKAQHER  120
HENTQLRNEN DKLRAENIRY KEALSNAACP NCGGPAAIGE MSFDEQHLRI ENVRLREEID  180
RISGIAAKYV GKPMMTYPNL PTRSLDLGVG NYGPQTGLSS EVFGAADLLR SVTGPTDADK  240
PMIIELAVAA MEELIRMAQS GEPLWIPSSD INCGELLCEE EYSRIFPRGI GPKPLGLKSE  300
ASRESAVVIM NHVNLVEILM DVNQWTNVFA SIVSRAVTLE VLSTGVAGNY NGALQVMTAE  360
FQVPSPLVPT RENYYIRYCK QHSDGTWAVV DVSLDNLRPS SISRCRRRPS GCLIQELPNG  420
YSKVTWIEHV EIDDRAVHSI YKPLVNSGLA FGAKRWVATL DRQCERLASL MANNISAGDV  480
GVISSPEGRK SMLKLAERMV MSFCTGVGAS TAHTWTTLSG SGADDVRVMT RKSMDDPGRP  540
PGIVLSAATS FWLPVPPKRV FDFLRDENSR SEWDILSNGG LVQEMAHIAN GRDPGNSVSL  600
LRVNSANSSQ SNMLILQESS TDSTGSYVIY APVDIVAMNV VLSGGDPDYV ALLPSGFAIL  660
PDGPTDPTVG INPEVGSGGS LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKGA  720
VLCDVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01293.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848972.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
RefseqXP_012848973.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A022QKL80.0A0A022QKL8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]