PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M01204.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | B3 | ||||||||
Protein Properties | Length: 818aa MW: 90998.9 Da PI: 8.2044 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53 | 6.1e-17 | 329 | 427 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k l+ sd+++ grlvlpkk+ae++ ++e+ l++ d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + Migut.M01204.2.p 329 FEKMLSASDAGRIGRLVLPKKCAEAYfpliT--QPEGLPLSILDVKGNEWMFQFRFwpNNNSRMYVLE-GITPCIQSMQLQAGDVVTFSRLE- 417 89*************************9653..445667***************9989999999***9.********************665. PP SEE..EEEEE CS B3 88 sefelvvkvf 97 e++lv++ + Migut.M01204.2.p 418 PEGKLVMGGR 427 7777777655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-27 | 326 | 429 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-18 | 326 | 424 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.45E-20 | 327 | 428 | No hit | No description |
Pfam | PF02362 | 1.4E-14 | 329 | 425 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.391 | 329 | 430 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-17 | 329 | 430 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.592 | 557 | 607 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 7.0E-10 | 562 | 604 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 818 aa Download sequence Send to blast |
MSTKLCFNSK CKEPSDKWRR GWRRRTGEYA HLCDRCASVY EDEKFCETFH LKSSGWRCCE 60 SCGKQIHCGC IVSFHMFVLL DAGGIECLTC AKGCILTPNP AWPPPLHFLP SQPERMKDLS 120 AKSWSPIVGS GPVPWRQAPS LFNGSDVPSN MKLRMPVEAD VSSGIDRYRI CERLSTASPE 180 MKQGSSFERL VNGNMRHGLF EKPQNGNTGL NVKEKRYSFV NNFKPVFPKN DSSSANLKLA 240 TVSSSKTETG NEHICGLLPP SSAISIPVAQ KVCSRNGMDL SGDTHMRNGK GRGDGRVRDQ 300 LLLRYRPQIV GEEFQQISSD SKTVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPLITQ 360 PEGLPLSILD VKGNEWMFQF RFWPNNNSRM YVLEGITPCI QSMQLQAGDV VTFSRLEPEG 420 KLVMGGRKAL AIPSSDQGAE ISIVGNNTFP PGDGSGRYNS VDVISVNGHE KEKILEDKPT 480 IHNKRKNSNF SAKSKRLRID DGDMIELKIT WKEAQGLMRP PAKIVPSFVV VEGCEFEEFE 540 EAEPVIGRPT IPGVDNFGEK IQWIQCEDCF KWRKVPADAL LPSRWICSEN EWDLDRSLCS 600 SAEELTKEQL EHMLPTMNKD SSINEITELD GDLAVALEGL DALANLAIQG EASSENRTKH 660 PRHKPGCTCI VCIQPPSGKG SKHKQSCDCM VCISLRRRCR TLMESRDRKK MEKQAESSCH 720 NLQSQPKQLR GKVSKSGYLN ETNERKSEIS PLKGQIDLNI QPEREEDSSP VSDSAPPKMK 780 CSLFPSFSAD GVFKQHQKSL GSNVIGNLVG KQMQKDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 5e-57 | 307 | 429 | 2 | 124 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M01204.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848516.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0563300 isoform X2 | ||||
TrEMBL | A0A022QKY5 | 0.0 | A0A022QKY5_ERYGU; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-150 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.M01204.2.p |