PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01204.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 820aa    MW: 91169.1 Da    PI: 8.2044
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01204.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.1e-17329427197
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k l+ sd+++ grlvlpkk+ae++       ++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ + 
  Migut.M01204.1.p 329 FEKMLSASDAGRIGRLVLPKKCAEAYfpliT--QPEGLPLSILDVKGNEWMFQFRFwpNNNSRMYVLE-GITPCIQSMQLQAGDVVTFSRLE- 417
                       89*************************9653..445667***************9989999999***9.********************665. PP

                       SEE..EEEEE CS
                B3  88 sefelvvkvf 97 
                        e++lv++ +
  Migut.M01204.1.p 418 PEGKLVMGGR 427
                       7777777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-27326429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-18326424IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-20327428No hitNo description
PfamPF023621.4E-14329425IPR003340B3 DNA binding domain
PROSITE profilePS5086310.391329430IPR003340B3 DNA binding domain
SMARTSM010191.8E-17329430IPR003340B3 DNA binding domain
PROSITE profilePS5105013.592559609IPR011124Zinc finger, CW-type
PfamPF074967.0E-10564606IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MSTKLCFNSK CKEPSDKWRR GWRRRTGEYA HLCDRCASVY EDEKFCETFH LKSSGWRCCE  60
SCGKQIHCGC IVSFHMFVLL DAGGIECLTC AKGCILTPNP AWPPPLHFLP SQPERMKDLS  120
AKSWSPIVGS GPVPWRQAPS LFNGSDVPSN MKLRMPVEAD VSSGIDRYRI CERLSTASPE  180
MKQGSSFERL VNGNMRHGLF EKPQNGNTGL NVKEKRYSFV NNFKPVFPKN DSSSANLKLA  240
TVSSSKTETG NEHICGLLPP SSAISIPVAQ KVCSRNGMDL SGDTHMRNGK GRGDGRVRDQ  300
LLLRYRPQIV GEEFQQISSD SKTVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPLITQ  360
PEGLPLSILD VKGNEWMFQF RFWPNNNSRM YVLEGITPCI QSMQLQAGDV VTFSRLEPEG  420
KLVMGGRKAL AIPSSDQGAE ISIVGNNTFP PGDGSGRYNS VDVISVNGHE KVAEKILEDK  480
PTIHNKRKNS NFSAKSKRLR IDDGDMIELK ITWKEAQGLM RPPAKIVPSF VVVEGCEFEE  540
FEEAEPVIGR PTIPGVDNFG EKIQWIQCED CFKWRKVPAD ALLPSRWICS ENEWDLDRSL  600
CSSAEELTKE QLEHMLPTMN KDSSINEITE LDGDLAVALE GLDALANLAI QGEASSENRT  660
KHPRHKPGCT CIVCIQPPSG KGSKHKQSCD CMVCISLRRR CRTLMESRDR KKMEKQAESS  720
CHNLQSQPKQ LRGKVSKSGY LNETNERKSE ISPLKGQIDL NIQPEREEDS SPVSDSAPPK  780
MKCSLFPSFS ADGVFKQHQK SLGSNVIGNL VGKQMQKDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-573074292124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01204.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848515.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X1
TrEMBLA0A022QKY50.0A0A022QKY5_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-150HSI2-like 1