PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.M01125.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 363aa MW: 39216.8 Da PI: 8.571 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124 | 5e-39 | 57 | 114 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknkk Migut.M01125.1.p 57 PHLKCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKKL 114 5789***************************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.2E-33 | 58 | 113 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-27 | 59 | 113 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.376 | 59 | 113 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 61 | 97 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 363 aa Download sequence Send to blast |
MTHQWPQNQN QIQQINDQKS MIDSSSAASV PNNNKVMEKT DPPPPPPPQQ QQLPPPPHLK 60 CPRCDSANTK FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKKLRRPSSS 120 AGGGSGGGIT TSAAKHSSAQ HHQQIDLSSS SSRPHASNYM MSNNNSNTSS FYPIELNFPF 180 SSYSTNSAAR VSSDNNNNTG AGLIFDLPQT HESSLGILGF SSGLNMAAAA IDEDYKNGGF 240 SRQLIQSSSG NNNYNSVLFG SSSSTMASLL ASTLEHQKFG ITDSSPHPIN NYDNEDNTHL 300 SINRWNPNIN NEQMMINNNS SDPAASSSSS LVWNTSSSNN NNVGSWFDPS NMAPSSSVPS 360 LI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.M01125.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KR339304 | 2e-38 | KR339304.1 Jasminum sambac microsatellite Js163 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848585.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.4 | ||||
TrEMBL | A0A022QKA2 | 1e-157 | A0A022QKA2_ERYGU; Uncharacterized protein | ||||
STRING | Migut.M01125.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28310.2 | 1e-34 | Dof family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.M01125.1.p |