PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M01107.1.p | ||||||||
Common Name | MIMGU_mgv1a000125mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HB-other | ||||||||
Protein Properties | Length: 1703aa MW: 190758 Da PI: 4.9122 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.3e-19 | 23 | 79 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR+ t+ qle+Le+ + +++yps+++r+eL+ klgLt+rq ++WF+ rR k+kk Migut.M01107.1.p 23 RPKRQMKTPFQLEVLEKTYSMEMYPSEATRAELSVKLGLTDRQLQMWFCHRRLKDKK 79 579****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-17 | 11 | 80 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-19 | 11 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.682 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-18 | 22 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-16 | 23 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.08E-15 | 23 | 81 | No hit | No description |
SMART | SM00571 | 1.0E-19 | 506 | 565 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.451 | 506 | 565 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.9E-17 | 507 | 562 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.8E-13 | 686 | 753 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.4E-9 | 866 | 909 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 6.4E-14 | 1033 | 1105 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1703 aa Download sequence Send to blast |
MEAGSDGEIN RNMNQSPAGG SKRPKRQMKT PFQLEVLEKT YSMEMYPSEA TRAELSVKLG 60 LTDRQLQMWF CHRRLKDKKE SVVGAAIKPH NPASVGKKRL TESPREELMT VEPVSGHHAS 120 GSGSASGSGS GSGSSQFDNG DDQPMAPTRY YESPRTIMER RVIACVEAQL GEPLRENGPI 180 LGVEFDELPP GAFGAPIVQR EQQDRYRHSY DSKLYGQYDS KHIKAASTGP HEAVESKIRI 240 DAYGHVAASY PYESPVDGHT SKSSSHMHGN GHLPREYGTE GQVSSMDIYS QPGRQMQFPS 300 PINTDFTTQN DNNLHMGRKR KTDEARIGKE VQAHEKKIRK ELEKQDLLRR KREEQMRKEM 360 ERQDRERKKE EQRMMREQQR QEEKFQREER REMERREKFL QKELLRAERK KQKDERLREK 420 EAARQKAAME RATARKIAKE STELIEDERL ELMELAAASK GLASILSLDY DTSQNLESFR 480 EALCEFPPKS VQLRRPFGFQ PWIDSEENVG NLLMVWKFCM TFADVLGLWP FTIDEFIQAL 540 HDYESRLLAE IHITILKLIV KDIEDVVRTP SGGPGTNQYS AINPEGGHPH IVEGAYLWGF 600 DIRNWQKHLN SLTWPEILRQ FALSAGLGPK LKKKGIDKVS ANDESKGCEE IVSTLRNGSA 660 AESAVAIMQE KGFSLQRKSR HRLTPGTVKF AAYHVLALEG SKGLNVIELA EKIQKSGLRD 720 LTTSKTPEAS ISVALSRDPI LFERIAPSTY CVRPAFRKDP ADAESVIAAA KDKIQRYANG 780 FLSGQNADEE ERDDDSDSDV ADGAEADAIA LSLDANKDGE CNELDSCSGD GKDKVPAADD 840 LQNGISTPGF GESNPDQGTE IDESKSGEPW VQGLTEGEYC DLSVEERLNA LVALIGVANE 900 GNSIRVILEE RMDTANALKK QMWAEAQLDK RRMREEIVSK YYDFSFGSVP EGGLSPLVVA 960 ENKIYDPTVT TLGKDYPSAV AEGIHNSVDN RAQDTTMDQF IPPPQQNGHT TERSRLQLKS 1020 YIGHRAEELY VYRSLPLGQD RRRNRYWQFV ASASCLDPGS GRIFVESPNG NWKLIDSEET 1080 FDTLLASLDT RGARESHLHI MLQKIEVSFK ECVQRNYRSF SDILDHNRNK GGQEAGGVTS 1140 SLGCGSVESP SSAVCSSNSD ILEPSVSFRI DFGRSGIEKK NLLKRYEDLQ TWTWKECLNS 1200 STVRALAYGK KRCSQLLGIC DVCLAFYDPK EDICPSCHQI HGNVGPKGNP PEQFTGEKSI 1260 TDGTDIIMSN SSPPRIRLIK AIVALLEVAV PSEALQSSWT EDLRETWGLE LQRSTSIEGL 1320 LQVLTQFEGF IKRDYLSEDF ETAEELLSCD SSRGAANGFK DPGSVPQLAW IPKTTAGVAL 1380 RLLELDASIF YTPNQKAESY EEKKVEALPN FALRYGYTKD TQKVDTMEFD IHGRIKEEDW 1440 DHHTPGSSGY RQVIRGRGGG GRPRGGKSQK RVMGSSQSGK RTGSAKQQGE PLTQSFMQHS 1500 VRTPGQKHGR GKRTVRRRRA EEQKTVPVEN LRDYLNNEKG TFRNNNNNVE NSVNFRAGNV 1560 VVEEDESSRS SSSMEEEAGD SDDNNGNENM YQYESWGGEA ATYGVPPNRS NEMVEMSEEE 1620 DDADGIEEEN YNDEEEEEEE NDDGENLGRY REFSENDGGG NLEGHMGFNE NDDDDDDDDD 1680 SDGDEEQNRD HGSPSVSEDY SD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 79 | RRLKDKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M01107.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848733.1 | 0.0 | PREDICTED: uncharacterized protein LOC105968647 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A022QL90 | 0.0 | A0A022QL90_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.M01107.1.p |