PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M01099.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 150aa MW: 17574.2 Da PI: 9.9606 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.8 | 7.8e-18 | 22 | 75 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t++q++ Le+ F +n+++ +++ +LA++lg++ rqV++W+qN+Ra++k Migut.M01099.1.p 22 RKKRLTENQVRLLESNFSSNNKLEPDRKCQLAAELGVPPRQVSIWYQNKRARDK 75 56779***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 103.8 | 1.4e-33 | 22 | 113 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++qv+lLE++F++++kLep+rK +la eLg+ prqv +W+qn+RAR k++ lE d+ L+ +++++ ++n+rL+ +v+ L++el++ Migut.M01099.1.p 22 RKKRLTENQVRLLESNFSSNNKLEPDRKCQLAAELGVPPRQVSIWYQNKRARDKAQSLEIDHGNLQLRLESVLADNARLKGQVAMLKDELNR 113 8**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.613 | 17 | 77 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.08E-16 | 19 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.0E-15 | 19 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.62E-13 | 20 | 78 | No hit | No description |
Pfam | PF00046 | 3.3E-15 | 22 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-18 | 24 | 80 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.0E-5 | 48 | 57 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.0E-5 | 57 | 73 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
PKMEELFQYT ETQKHQTITK SRKKRLTENQ VRLLESNFSS NNKLEPDRKC QLAAELGVPP 60 RQVSIWYQNK RARDKAQSLE IDHGNLQLRL ESVLADNARL KGQVAMLKDE LNRIQSAFLR 120 LLHRRVWIWF LIWLGDDSID SHYIVYGCP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M01099.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848650.1 | 1e-78 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
Swissprot | Q9FN29 | 3e-30 | ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A022QNI5 | 3e-77 | A0A022QNI5_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 1e-32 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Migut.M01099.1.p |