PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.M01083.1.p | ||||||||
Common Name | MIMGU_mgv1a0222731mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21909.6 Da PI: 6.5316 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.7e-20 | 123 | 174 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd ++ g +r++lg+f taeeAa a+++a+++++g Migut.M01083.1.p 123 HYRGVRRRP-WGKYAAEIRDsRRKFG--ARVWLGTFETAEEAAMAYDEAALRIRG 174 8********.**********554443..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-29 | 122 | 183 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.84E-29 | 122 | 182 | No hit | No description |
PROSITE profile | PS51032 | 23.261 | 123 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-21 | 123 | 183 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-15 | 123 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-33 | 123 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 124 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 148 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MAVDMQQSES SSSEAILENV WANFISKTNT HNDEESNMFE SSPKSWEKLP SFDREESIET 60 IILERLPSLG RWISMGAEAW EQHLDGIFLP TTTTKDNNIK TTEITADIHC TRKPGKVAAV 120 AKHYRGVRRR PWGKYAAEIR DSRRKFGARV WLGTFETAEE AAMAYDEAAL RIRGPNTYLN 180 FPLEKVVRTG ASL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-26 | 119 | 183 | 1 | 64 | ATERF1 |
3gcc_A | 3e-26 | 119 | 183 | 1 | 64 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.M01083.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848458.1 | 1e-137 | PREDICTED: ethylene-responsive transcription factor ERF091 | ||||
TrEMBL | A0A022QJC2 | 1e-135 | A0A022QJC2_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11237 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18450.1 | 5e-23 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.M01083.1.p |