PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00928.1.p
Common NameMIMGU_mgv1a018957mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24906.3 Da    PI: 7.8084
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00928.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.69.2e-20957149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k+ie ks  qvtf+kRr g++ KA+ELS+LC+ae+a+++ s+ +k++ y
  Migut.M00928.1.p  9 KKIEKKSSLQVTFTKRRMGLFRKASELSILCGAEIAILVQSPADKIFSY 57
                      68******************************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.49E-25174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.455161IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-30160IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-19323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRRKIEIKK IEKKSSLQVT FTKRRMGLFR KASELSILCG AEIAILVQSP ADKIFSYGHP  60
SVEALVNRLL HHNGGGAFPS HELVASSSSS TTRSYSLQRQ IVPWQEDGRI KYEEALRKLE  120
FEKLSIQKHE IMSTSMDFWW DKSIDQFTEL HELEEFVQAL EALKNNVSCK LEEMAKHKLQ  180
PDFASSSNNF FDHHNYHGGV FPLPAINHQD FYVSNLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-15173173MEF2C
5f28_B8e-15173173MEF2C
5f28_C8e-15173173MEF2C
5f28_D8e-15173173MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00928.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848493.11e-157PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A022QKT11e-157A0A022QKT1_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13821415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-26AGAMOUS-like 62