PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M00787.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | SBP | ||||||||
Protein Properties | Length: 185aa MW: 20783.7 Da PI: 10.1787 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.5 | 2.6e-40 | 99 | 175 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C ve+C+++ls +k+y++rhkvCevh+kapvv+v+gl qrfCqqCsrfhe++efDe+krsCrrrLa+hnerrrk++ Migut.M00787.1.p 99 CCLVESCRKNLSGCKNYYQRHKVCEVHAKAPVVFVDGLGQRFCQQCSRFHEVTEFDETKRSCRRRLAGHNERRRKSS 175 6**************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.7E-32 | 92 | 161 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.889 | 97 | 174 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.06E-37 | 97 | 177 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.2E-31 | 100 | 173 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MPSIFHLLLF RTLISSFLNL NSSTTTVFRK KKEKKKNPNN PKMTSSYLKI TEGDDEEDEG 60 ESDVELEFVG SPLKRKKMNL GQGSSGRRSG GGGAAAPPCC LVESCRKNLS GCKNYYQRHK 120 VCEVHAKAPV VFVDGLGQRF CQQCSRFHEV TEFDETKRSC RRRLAGHNER RRKSSLEPNT 180 RAKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-33 | 90 | 173 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 33 | RKKKEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M00787.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT717965 | 0.0 | KT717965.1 Erythranthe guttata squamosa promoter-binding protein 1 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847855.1 | 1e-134 | PREDICTED: squamosa promoter-binding protein 2-like | ||||
Swissprot | Q38740 | 6e-51 | SBP2_ANTMA; Squamosa promoter-binding protein 2 | ||||
TrEMBL | A0A022RZ65 | 1e-100 | A0A022RZ65_ERYGU; Squamosa promoter-binding-like protein | ||||
STRING | Migut.M00787.1.p | 1e-134 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 7e-36 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Migut.M00787.1.p |
Publications ? help Back to Top | |||
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