PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M00776.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 193aa MW: 21040.6 Da PI: 9.0525 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.9 | 3.1e-17 | 16 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ++++eq++ Le+ F +++ e++ +LA++lg++ rq+ +W+qN+Ra++k+ Migut.M00776.1.p 16 QKKRLSQEQVRLLEASFDAAKKLEPEHKFQLARQLGVPPRQIAIWYQNKRARWKN 70 56789************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 108.3 | 5.5e-35 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rls+eqv+lLE sF++ +kLepe+K +lar+Lg+ prq+a+W+qn+RAR+k++ lE d+ +L+ +++a ++e+erLe++v++Lr elk+ Migut.M00776.1.p 16 QKKRLSQEQVRLLEASFDAAKKLEPEHKFQLARQLGVPPRQIAIWYQNKRARWKNQSLELDCGSLQVRLEAAEAEKERLERQVASLRGELKR 107 79*************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.807 | 11 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.0E-16 | 13 | 78 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-12 | 13 | 75 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-14 | 16 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.36E-12 | 17 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-18 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MNNLPQNPKN HSHRAQKKRL SQEQVRLLEA SFDAAKKLEP EHKFQLARQL GVPPRQIAIW 60 YQNKRARWKN QSLELDCGSL QVRLEAAEAE KERLERQVAS LRGELKRAQD SLSGFRQLAA 120 AQAPPVSSLS STCCDEGGGS SSLNDDVGCS ANWANGGGGG GAGDALQFEE LYACLMLARS 180 GAKRLINENG QR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M00776.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848848.1 | 1e-126 | PREDICTED: homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A022RY58 | 1e-125 | A0A022RY58_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 3e-29 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Migut.M00776.1.p |