PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00456.1.p
Common NameLOC105961739, MIMGU_mgv1a025845mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 451aa    MW: 49107.1 Da    PI: 5.1228
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00456.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-162673148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT  Ed  l+++vk +G g+W+++ r  g+ R++k+c++rw ++l
  Migut.M00456.1.p 26 KGPWTSNEDSTLIEYVKNHGEGNWNAVQRNSGLSRCGKSCRLRWANHL 73
                      79******************************************9986 PP
2Myb_DNA-binding50.64.6e-1679122146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g+++++E++l+v++++++G++ W++ a+ ++ gRt++++k++w++
  Migut.M00456.1.p  79 KGAFSADEEKLIVELHAKYGNK-WARMASQIP-GRTDNEIKNYWNT 122
                       799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2612173IPR017930Myb domain
SuperFamilySSF466894.12E-2923120IPR009057Homeodomain-like
SMARTSM007178.4E-132575IPR001005SANT/Myb domain
PfamPF002493.6E-142673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-222780IPR009057Homeodomain-like
CDDcd001672.24E-92873No hitNo description
PROSITE profilePS5129424.69774128IPR017930Myb domain
SMARTSM007173.4E-1678126IPR001005SANT/Myb domain
PfamPF002494.3E-1579122IPR001005SANT/Myb domain
CDDcd001678.83E-1281124No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2481127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MARNGCGGGL RETPIAAVKS RNGLKKGPWT SNEDSTLIEY VKNHGEGNWN AVQRNSGLSR  60
CGKSCRLRWA NHLRPNLKKG AFSADEEKLI VELHAKYGNK WARMASQIPG RTDNEIKNYW  120
NTRLKRRQRA GLPIYPHENQ HKQQLNSSPP PPPLSSYLVS AHLPNPNPSP NPIPNPNPNP  180
NPNPNPLSFY EMFTSPQNQA NYNTPYINNQ MKLYNDNNNG SISLSLSASN SSFSSPTLSA  240
APFFNHTPLP KPSFNLQFNN SLNYGINSGP DMGVFGLPSI QSPVASSSDF VMTTTTPGSS  300
DCAEDYYEVE TGFERCNKKS GLLEDLLGES QALAGKTEDS FIAEDGNLHA NADAFGFDEG  360
AENKASGEGG SSMDDDLLNL LDNFPLSVPI PNWDEEIGNE SPCLTDGSNG AVESQLVAPQ  420
YNPVANSNGA ANQDWNFGGS FMWNNMPSIY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29241275107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00456.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841447.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A022R1A50.0A0A022R1A5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-73myb domain protein 101