PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M00367.1.p | ||||||||
Common Name | MIMGU_mgv1a018138mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 26915.1 Da PI: 5.6613 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l +++++G ++W++ + g+ R++k+c++rw +yl Migut.M00367.1.p 14 KGAWSEEEDNKLRAYIRRYGHPNWRLLPVFAGLARCGKSCRLRWVNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5.2e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr+T++E++l+++++ qlG++ W++Ia++++ gRt++++k++w+ Migut.M00367.1.p 67 RGRFTEDEEDLIIKLHDQLGTK-WSAIAAKLP-GRTDNEVKNYWHA 110 89********************.*********.***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.655 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.71E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.65E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.345 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.18E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVRPPCFDKN GMKKGAWSEE EDNKLRAYIR RYGHPNWRLL PVFAGLARCG KSCRLRWVNY 60 LKPGLKRGRF TEDEEDLIIK LHDQLGTKWS AIAAKLPGRT DNEVKNYWHA HINKRNKRNG 120 TITKVMHGNQ SMSELEEHVS EDVFGKDLSV ENPKNFDDLD TFVDSFLADK VSEEETRDFG 180 LIHQEMQNVN KPTCSDSSDS SITTSWGSNE ESRENFWSEP ILEDDTFDMV LW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-24 | 12 | 115 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M00367.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012852361.1 | 1e-160 | PREDICTED: transcription factor MYB32-like | ||||
Swissprot | Q9M0J5 | 3e-53 | MYB41_ARATH; Transcription factor MYB41 | ||||
TrEMBL | A0A022Q837 | 1e-156 | A0A022Q837_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-55 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Migut.M00367.1.p |
Publications ? help Back to Top | |||
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