PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M00283.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HB-other | ||||||||
Protein Properties | Length: 236aa MW: 26857.2 Da PI: 10.7095 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.8 | 7.7e-18 | 71 | 126 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t +q+++Lee+F n++p++++r eL ++lg++ q+k+WFqN+R ++k Migut.M00283.1.p 71 RKRHQRHTLHQIQRLEEYFWGNPHPTKKQRNELGEELGMEPLQIKFWFQNKRFQMK 126 6788899*********************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.77E-18 | 56 | 126 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-17 | 62 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.795 | 68 | 128 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.6E-14 | 70 | 132 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.67E-13 | 71 | 129 | No hit | No description |
Pfam | PF00046 | 2.2E-15 | 71 | 126 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MENQFGPGWT RSEPGPTSPR VGFGSPKSRT QTTTRPVAVS MKNSGMSSDG TQNEENVSSI 60 CENSETRRQN RKRHQRHTLH QIQRLEEYFW GNPHPTKKQR NELGEELGME PLQIKFWFQN 120 KRFQMKVKHE HRENTFLRVE NEKLQEENSR LRESLINACS IGCGRMFAPR DMSSNERQLR 180 MENERLTEQF CRVAAVAANC IGKKYSSSSP SSSGAAATFR GTKGKGKGKG KKVMF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M00283.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020234199.1 | 4e-45 | homeobox-leucine zipper protein HDG2 isoform X1 | ||||
Refseq | XP_029130378.1 | 4e-45 | homeobox-leucine zipper protein HDG2 isoform X1 | ||||
Swissprot | A2YR02 | 2e-42 | ROC7_ORYSI; Homeobox-leucine zipper protein ROC7 | ||||
Swissprot | A3BPF2 | 2e-42 | ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7 | ||||
TrEMBL | A0A022RQT8 | 3e-59 | A0A022RQT8_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13806 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 3e-41 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | Migut.M00283.1.p |