PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00234.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 750aa    MW: 86220.4 Da    PI: 8.6643
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00234.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.77e-1287166191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fY e+Ak+ GF v k++++k+  +ge +   ++C k+ k+ ++k++          +r++C a+++  k+ dg w+v++++  HnHel+p
  Migut.M00234.1.p  87 RFYLEHAKHRGFGVIKRTTRKT-ADGENKYLLMTCDKSRKTIPQKTT----------KRVDCPARVNTIKQCDGSWMVSTVVAGHNHELTP 166
                       59**************999998.888899999*****9999998777..........9********999999****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-987166IPR004330FAR1 DNA binding domain
PfamPF105515.8E-33286379IPR018289MULE transposase domain
PROSITE profilePS509669.94550588IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-4563590IPR006564Zinc finger, PMZ-type
PfamPF044341.6E-4564587IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MDSSLIAMME ELLGANSENN FASTNEVQSF GSHEVEVLSH HIEAPSTSNI EDEVEISSNH  60
TEIPLISSVQ EGPTTGTLYP DIESLFRFYL EHAKHRGFGV IKRTTRKTAD GENKYLLMTC  120
DKSRKTIPQK TTKRVDCPAR VNTIKQCDGS WMVSTVVAGH NHELTPDMSI LIPARRNIST  180
SMKRQLEAND IAGIRPCKSI RLAEVQSGGP MNLGCLPKDC RNFIEGRRKL RLGTGDAEAI  240
RKLFWGLQKR DTNFIYSLDI DDHGRLCNML WIHSRCRAAY AEFNDVLTFD TTYLVNKYKM  300
PFATIVGINH HGQSILLGCA LVIHEDAESF KWFFKHWLEA MDDVHPKCIV TDQCESIKIA  360
IRELMPGTIH RYCLWHIMSK VPQKFKGVAQ YNNVVRDFKR IVYESITSET FELKWRKLGT  420
LLLDHVFWAG MLSTQRSEGM HAFFDGYIHS RSSLKQFVEQ YELAMANKIQ KEFIAEHESK  480
NKLIRCLSQF PWERQFRSAY TNNLFKKVQE EISCMLYCHI VVEQYDQTSG VEKISVHEKS  540
KVNEFYTRDF TFTVDYTVDG EYFSCNCKKF EFMGLLCCHI LVVLSKKDVQ SVNERYLLRR  600
WRKDIYRRHY SIIFAGGYPH MTEKYKKFQD VERVFQECVD SAISSTQKMD FLKQRMDEVK  660
DELLQFDQPP VGESTNVSAR TNGVDSVGGT PILNPKVTCA HGRPRQNRFI SASEVNRGRR  720
ATRGRGNLGR GRGNSGRDRG NSGRERNKF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00234.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837534.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A022RAH90.0A0A022RAH9_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.M00234.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-99FAR1 family protein