PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M00176.1.p | ||||||||
Common Name | LOC105968183, MIMGU_mgv1a022879mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 199aa MW: 20201.1 Da PI: 6.516 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 187.6 | 9.2e-59 | 19 | 114 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfedyv+plkvyl+kyre+e Migut.M00176.1.p 19 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIE 111 89******************************************************************************************* PP NF-YB 95 gek 97 gek Migut.M00176.1.p 112 GEK 114 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.2E-54 | 13 | 121 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.86E-40 | 21 | 118 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.6E-28 | 24 | 88 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.6E-20 | 52 | 70 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 55 | 71 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.6E-20 | 71 | 89 | No hit | No description |
PRINTS | PR00615 | 1.6E-20 | 90 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MADSDNDSGG HSNSNASSRE QDRFLPIANV SRIMKKALPA NAKISKDAKE TVQECVSEFI 60 SFVTGEASDK CQREKRKTIN GDDLLWAMTT LGFEDYVDPL KVYLAKYREI EGEKTSVAAV 120 KDAAGGGSAV TSGGGGYNGG GIYGGGGPVM GYHHGGQMYG GGGGFQHIGG GGNLDTTGSS 180 GSYGGGSGGG GATTGRQR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 9e-50 | 14 | 109 | 2 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M00176.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848260.1 | 1e-141 | PREDICTED: nuclear transcription factor Y subunit B-3 | ||||
Swissprot | O23310 | 5e-77 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A022QLU9 | 1e-140 | A0A022QLU9_ERYGU; Uncharacterized protein | ||||
STRING | Migut.M00176.1.p | 1e-141 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-68 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Migut.M00176.1.p |
Entrez Gene | 105968183 |
Publications ? help Back to Top | |||
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