PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00109.1.p
Common NameLOC105951965, MIMGU_mgv1a001422mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARF
Protein Properties Length: 823aa    MW: 91275 Da    PI: 6.2082
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-24132233199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae+       ++ +++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Migut.M00109.1.p 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQTPPC-QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WN 221
                       99****************************98555666.59************************************************..78 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ +l+++++r+
  Migut.M00109.1.p 222 ENNQLFLGIRRA 233
                       88889****997 PP
2Auxin_resp118.26.6e-39258341183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F++++nPras+seFv++++k+ k+ + ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Migut.M00109.1.p 258 AAHAAATNSRFTIFFNPRASPSEFVIPLAKYAKSAYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 341
                       79******************************9988689******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-48118261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-43123247IPR015300DNA-binding pseudobarrel domain
CDDcd100173.78E-23131232No hitNo description
PfamPF023625.4E-23132233IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056132234IPR003340B3 DNA binding domain
SMARTSM010191.0E-25132234IPR003340B3 DNA binding domain
PfamPF065071.4E-33258341IPR010525Auxin response factor
PfamPF023091.1E-6715807IPR033389AUX/IAA domain
SuperFamilySSF542771.96E-8715800No hitNo description
PROSITE profilePS5174522.372725809IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MMLSSSSTSS GANAQQEEGE KKCLNSELWH ACAGPLVSLP LLGSRVVYFP QGHSEQVAAS  60
TNKEIDAAIP NYPGLQPQLI CQLHNVTMHA DIETDEVYAQ MTLQPLTPQE QKDICLLPAE  120
LGSPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQTPPCQ ELIAKDLHGN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NENNQLFLGI RRANRPQAVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FFNPRASPSE FVIPLAKYAK SAYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSPFSLRMKR PWPSGLPSFP GLKDGGDMSM NSPITWLRGG MGDQGMMQQL  420
NFQGIGGGSH WMQPRLDPSM FCMQPDIYQV MALQEAGSLL DPSKITNSPL MQFQQNLPNV  480
SAPSLMQNYQ SVPQQSFLQN IPENQYNQYN HQQQFQDQQQ NRKPMGPTSD SPQFTTPIQN  540
LTDFMGSNIN NIASSNNNSL LNSHIMNLHG PNSSSSKRVA LLDPQIPSKV SSTSSHFGVP  600
HLEELVTPHS KGSELSAVLP PFLGRDFSDF QSVTNHSHNN NNNSNNNNNN NDNNGLYSSG  660
NVMNNNNNNN NNGNGSEQLS MAYATSAFVN GAGGDFPINS DMTSSSCVDE SGYLQSSENV  720
DPTSRAFVKV HKSGSFGRSL DISKFSSYDE LRGELSRMFG LEGFLEDSQR SGWQLVFVDR  780
ENDILLLGDD PWQEFVNSVW YIKILSPLEV QQMGKEEGRD FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1561636243388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00109.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830909.10.0PREDICTED: auxin response factor 17-like
SwissprotQ9ZTX80.0ARFF_ARATH; Auxin response factor 6
TrEMBLA0A022RS870.0A0A022RS87_ERYGU; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Oh E, et al.
    Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.
    Elife, 2015.
    [PMID:24867218]
  3. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  4. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  5. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  6. Batista VG,Pinheiro MP,Melo Filho PA,Santos RC,Lima LM
    Temporal and tissue expression of genes involved in buds of earliness cotton cultivar.
    Genet. Mol. Res., 2015. 14(3): p. 7386-94
    [PMID:26214417]
  7. Li P, et al.
    Ca(2+) -regulated and diurnal rhythm-regulated Na(+) /Ca(2+) exchanger AtNCL affects flowering time and auxin signalling in Arabidopsis.
    Plant Cell Environ., 2016. 39(2): p. 377-92
    [PMID:26296956]
  8. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  9. Luo S, et al.
    Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 1156
    [PMID:26734051]
  10. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  11. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  12. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]