PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.M00064.1.p | ||||||||
Common Name | LOC105951929, MIMGU_mgv1a007482mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 407aa MW: 44412.2 Da PI: 5.0825 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.3 | 2.7e-07 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e++ + +C+++ lC +C ++H+ H++ Migut.M00064.1.p 5 CEFCGEQRSIVYCQSDAASLCLSCDRNIHSAnalskrHSR 44 *****************************65677777765 PP | |||||||
2 | zf-B_box | 20.5 | 9.7e-07 | 46 | 89 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +C++++++++ C + ++ lC++C eH + H+++ Migut.M00064.1.p 46 LVCERCNSQPAFVRCVEEKVSLCRNCDWMEHGNgsnvntaHKRQ 89 68*****************************5578888888865 PP | |||||||
3 | CCT | 61.4 | 2.9e-21 | 349 | 392 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RY+eK+k RkFeKk+rYesRKa+A+ R RvKGrFvk+ Migut.M00064.1.p 349 RTDAVMRYREKKKARKFEKKVRYESRKARADVRRRVKGRFVKAG 392 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.343 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.69E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 3.9E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.172 | 43 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.04E-4 | 47 | 76 | No hit | No description |
SMART | SM00336 | 1.1 | 48 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.378 | 349 | 391 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.1E-16 | 349 | 391 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 407 aa Download sequence Send to blast |
MGYLCEFCGE QRSIVYCQSD AASLCLSCDR NIHSANALSK RHSRTLVCER CNSQPAFVRC 60 VEEKVSLCRN CDWMEHGNGS NVNTAHKRQA VNCYTGCPSA SELSANWSFL LDSTCEQGIN 120 LLSITDKTPP ITCENSAGKN NNSQVLGESN NVDADKSTEW MDSLTPLLDH RLNVDHRSGS 180 TSSSAPKVFL SGAKGPAVCE DGGLYDDLCM DEVDLNIENY EELFGVAYDN PELFGYDGID 240 EIFGTKDMSG SNCHGAYAAE GSSIGGANVM QSACSNAESA DSFASCKTEP NLRYSRQLHQ 300 TLSFSGINGE IEINGGDFQD CGVSSSMAIA GEPPWYPPGP DSSLPSTSRT DAVMRYREKK 360 KARKFEKKVR YESRKARADV RRRVKGRFVK AGDAYDYDPL SPSRSF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.M00064.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830864.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 1e-130 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A022RV22 | 0.0 | A0A022RV22_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-100 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.M00064.1.p |
Entrez Gene | 105951929 |