PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M00028.1.p | ||||||||
Common Name | LOC105951896, MIMGU_mgv1a005166mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GRAS | ||||||||
Protein Properties | Length: 495aa MW: 55716.1 Da PI: 7.1395 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 396.3 | 3.3e-121 | 134 | 494 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l+++L++cA+avs++d q+l+++l++l+s +g+p+qRl ay++e+L ar+++s+ lyk+ +p + + l++++l++e++P++k Migut.M00028.1.p 134 LKQVLIACAKAVSNDDVPTSQRLMSELRQLVSVSGEPLQRLGAYMLEGLVARVSSSGRFLYKSREPVNR------QLLSYTQLLHEACPYFKY 220 5799*********************************************************87777766......58999************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlva 183 +++ aN aI ea++ eervHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s + + +g+rL+k+A++++vpfefn Migut.M00028.1.p 221 GYMSANGAIAEAMKDEERVHIIDFQIGQGSQWVPLIQAFAARPGGPPRIRITGIDDATSAyapRGSGSNIVGRRLSKLAKSFKVPFEFNS--- 310 ********************************************************99999999999**********************9... PP GRAS 184 krledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 + +le+L +++ +EalaVn+++ lhr++desvs +vL++vk+l+Pkvv++veqe+++n++ F rfle+l+yy+a+f+s++++ Migut.M00028.1.p 311 --SSGAHLENLVTQSgqKEALAVNFAFVLHRTPDESVS------TVLRMVKRLNPKVVTLVEQELNTNTAAFYPRFLETLDYYTAMFESIDVT 395 ..344455777666666****************65543......699********************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 ++re++eri++E+++l+r++vnv+aceg er+erhetl+kW++r+++aGF++ pls+ ++ ++k l++ ++ ++vee++g+l+lgW +r L Migut.M00028.1.p 396 VSREDKERINMEQHCLARDVVNVIACEGGERVERHETLGKWKSRFKMAGFRQFPLSSLVNGTIKKLMESWCNR-FSVEERDGALYLGWLNRDL 487 *********************************************************************9977.******************* PP GRAS 368 vsvSaWr 374 v++SaW+ Migut.M00028.1.p 488 VAASAWK 494 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.696 | 108 | 475 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-118 | 134 | 494 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MQASGHHSRS RMPNTLCCQP VLKFESYSPQ QCHNLNPQNS SHNFQDRFCT LESSLLIETC 60 YNSPSSVTFS PNNESSLSHQ EDANELKHKL RELENVMFGP DLDFLENYEN TLLASAEIDS 120 WRQIVEPTPR GDHLKQVLIA CAKAVSNDDV PTSQRLMSEL RQLVSVSGEP LQRLGAYMLE 180 GLVARVSSSG RFLYKSREPV NRQLLSYTQL LHEACPYFKY GYMSANGAIA EAMKDEERVH 240 IIDFQIGQGS QWVPLIQAFA ARPGGPPRIR ITGIDDATSA YAPRGSGSNI VGRRLSKLAK 300 SFKVPFEFNS SSGAHLENLV TQSGQKEALA VNFAFVLHRT PDESVSTVLR MVKRLNPKVV 360 TLVEQELNTN TAAFYPRFLE TLDYYTAMFE SIDVTVSRED KERINMEQHC LARDVVNVIA 420 CEGGERVERH ETLGKWKSRF KMAGFRQFPL SSLVNGTIKK LMESWCNRFS VEERDGALYL 480 GWLNRDLVAA SAWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-53 | 141 | 493 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-53 | 141 | 493 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-53 | 141 | 493 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M00028.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182567 | 0.0 | AC182567.2 Erythranthe guttata clone MGBa-50E20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830818.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A022RRQ6 | 0.0 | A0A022RRQ6_ERYGU; Uncharacterized protein | ||||
STRING | Migut.M00028.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.M00028.1.p |
Entrez Gene | 105951896 |
Publications ? help Back to Top | |||
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