PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01945.1.p | ||||||||
Common Name | MIMGU_mgv1a004217mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 540aa MW: 59857.6 Da PI: 7.9507 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 59 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l++av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l Migut.L01945.1.p 59 KGGWTPEEDDTLKKAVAAFRGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59.5 | 7.6e-19 | 111 | 157 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++ ++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l Migut.L01945.1.p 111 KGPWTPEEDDKITELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.6 | 1e-16 | 163 | 206 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l++a++ +G++ W+ ar ++ gRt++ +k++w++ Migut.L01945.1.p 163 KDAWTLEEELTLLNAHRVHGNK-WAELARLLP-GRTDNAIKNHWNS 206 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.467 | 54 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 59 | 105 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-14 | 60 | 115 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 61 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.64E-12 | 62 | 105 | No hit | No description |
PROSITE profile | PS51294 | 30.006 | 106 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-30 | 108 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-17 | 110 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-18 | 111 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.73E-15 | 113 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-28 | 117 | 160 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-22 | 161 | 212 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.903 | 162 | 212 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-15 | 162 | 210 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 163 | 206 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.57E-11 | 165 | 208 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MAEAKSDVIC LEKKESAAAS SSSFSENSSS IVLKSPGISS PTSTSPAHRR TTGPIRRAKG 60 GWTPEEDDTL KKAVAAFRGK SWKKIAEFFP DRSEVQCLHR WQKVLNPELV KGPWTPEEDD 120 KITELVARYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPH IKKDAWTLEE ELTLLNAHRV 180 HGNKWAELAR LLPGRTDNAI KNHWNSSLKK KLDFYLATGN LPPAAKNVPQ NGARDSNSSA 240 ASIGVFLIGS NRGSNSTVLT SCGTTDSCKV EHANDKPDTR IQDEDQDHDI DTCVRSEYTS 300 SDCNKCEEMP SEAGTIHSNI MESSKLDDRH GIYDAIDQYR IIGASWHYEN PVYGTLCYEP 360 PVLGNYDLLD SNLANISLKQ SESDSSPTTS ATPFFTPPSV KSRCLPAQTP ESILKIAARS 420 FPNTPSILRK RNSDRTPKEA FLPNGEHNQK NSSESTELQN NSLRADTASD DDDDGLSGNK 480 SFNSSPPYRL RFKRTSVLKS VEKQLDFDIS MDNNTKSGGA DVKEIPPVTK FVYTRHRRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 8e-68 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-68 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01945.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077474.1 | 0.0 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_011077475.1 | 0.0 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_011077476.1 | 0.0 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_020549498.1 | 0.0 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_020549499.1 | 0.0 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_020549500.1 | 0.0 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_020549501.1 | 0.0 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_020549502.1 | 0.0 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_020549503.1 | 0.0 | transcription factor MYB3R-3-like isoform X2 | ||||
Swissprot | Q6R032 | 1e-147 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A022QG78 | 0.0 | A0A022QG78_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5461 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-136 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01945.1.p |
Publications ? help Back to Top | |||
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