PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01938.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Dof | ||||||||
Protein Properties | Length: 388aa MW: 42194.8 Da PI: 9.9677 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.7 | 5.4e-38 | 108 | 167 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+ss Migut.L01938.1.p 108 ETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSS 167 6789*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-37 | 91 | 165 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.6E-32 | 110 | 165 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.292 | 111 | 165 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 113 | 149 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MCDTTKTFTK EKEGKKNQRI NTRMDFSSIP AYLDSSNWHL QHQNHQIIGI GGNSNPLLPP 60 PTRPAGHAQP PPPPPLPPQP HGGGSAAGSI RPGSMSERAR MANIPMPETA LKCPRCESTN 120 TKFCYFNNYS LSQPRHFCKT CRRYWTRGGA LRSVPVGGGC RRNKRSSKST TSKSPASSDR 180 QTTTSSSTST VSTNNGTTTT TTNTANILGL TPQLPPLRFL SPLSQLTDNF AGEMGLNNYT 240 GISAPAVGPN EMNFHNIGGI NEPWRMQQVQ QFPFFGGLNL DSGINYQFHG GDLGFGGGEM 300 SHHHQQQQQV RAAPKLSSSF LSQLASVKME DNNRELSLSR QLLMAGSINN NDQWINNNNN 360 NAENTSANNN WTDLSSFSSS STSNPLQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00295 | DAP | Transfer from AT2G37590 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01938.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012850428.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
TrEMBL | A0A022QD34 | 0.0 | A0A022QD34_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L01938.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1917 | 24 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 2e-48 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01938.1.p |