PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01914.1.p
Common NameLOC105969966, MIMGU_mgv1a000668mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARF
Protein Properties Length: 1026aa    MW: 113977 Da    PI: 6.5465
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01914.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.78.1e-22132233199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++   W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F +d 
  Migut.L01914.1.p 132 FCKTLTASDTSTHGGFSVPRRSAEKIfppldftMQPPAQ--ELVARDLHDSMWTFRHIFRGQPKRHLLTTGWSLFVSGKRLIAGDSVLFIRD- 221
                       99*****************************96555444..8************************************************55. PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        ++++++++++r+
  Migut.L01914.1.p 222 -EKQQFLLGIRRA 233
                       .555569999997 PP
2Auxin_resp116.13e-38258341183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdld+v+W+nS+Wr+L+
  Migut.L01914.1.p 258 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVSWKNSQWRNLQ 341
                       79******************************998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-41123247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-42123261IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-19131232No hitNo description
PfamPF023622.0E-19132233IPR003340B3 DNA binding domain
SMARTSM010191.8E-22132234IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998132234IPR003340B3 DNA binding domain
PfamPF065077.5E-34258341IPR010525Auxin response factor
PROSITE profilePS5174528.394913997IPR000270PB1 domain
PfamPF023096.5E-7914998IPR033389AUX/IAA domain
SuperFamilySSF542778.34E-7930991No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1026 aa     Download sequence    Send to blast
MKTPNSGAGA PPANASAAEG EKKNINRELW QACAGPLVNL PVAGTHVVYF PQGHSEQVAA  60
SMKKNADALI PNYPNLPPKL LCLLHNVTLH ADPETDEVYA QMTLQPVPSF DKDALLRSDL  120
SMKSNKPQTE FFCKTLTASD TSTHGGFSVP RRSAEKIFPP LDFTMQPPAQ ELVARDLHDS  180
MWTFRHIFRG QPKRHLLTTG WSLFVSGKRL IAGDSVLFIR DEKQQFLLGI RRANRQPTNM  240
SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK AVCSNQISLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDSV SWKNSQWRNL QVGWDESTAG EKRSRVSIWE  360
IEPVTAPFFI CPTPPFFRPK RTRQPGMLDD DSSDMDNLFS RRMPWLGDEY GLKDSQSQQG  420
LSLVQWMSMQ QNPSLANSMQ QPNYINGSEN SRPLGPPATQ IPHQYSPQFN PQRPNQPPQQ  480
QLTDIDQPQR QNFVAAQNLP SNQVQSQVMQ QQQSFLNNHQ LQRNSNPPQN LPQQQQNLIP  540
AVDQTSQQLH ISDNQIQLQL LQKLHQQQQS LLGQQTSQPT QLQDIPSNFS MSMKRSQMID  600
PSQETSNMHH PSQQMPRNPS QNNLQFAHQF GTQSELSGHV GTTLNQTNNM LMNGAIGNNK  660
GQSAVTDDVP SCSTSPSTNN CPNAVQPLKN VRNNRVATTM GDEIITHPSF TLLDSTTGLD  720
PMSSGGNLVK DLHQKPGNKP PLNTTTTNNN NSTSRSQNQG FFAASQTYHL NSGGTHIDYL  780
DSSSSATSVL SQNDVRMPQN NSMSFNSTQS MLFSDQRNND SFGATNMDNQ LGIPMMSEPL  840
ITRNMVGPDK DFSTYENIPT DVQNEPSSSM VSQSFGVPDI TFNSIDDSNL NDGNFMNGGG  900
GAWVPPTQIP RLRTYTKVYK RGAVGRSIDI SRYSCYDELK QDLARRFGIE GQLEDRQRVG  960
WKLVYVDHEN DVLLVGDDPW EEFVSCVRCI KILSPQEVQQ MSLDGDFGNS VLPNQACSSS  1020
DNGLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1662136247388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01914.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850188.10.0PREDICTED: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A022QD110.0A0A022QD11_ERYGU; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19