PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01878.1.p | ||||||||
Common Name | MIMGU_mgv1a022559mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25721.1 Da PI: 5.0418 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.4e-13 | 28 | 73 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + + Er+RR+++N+ + Lr+++P+ +K++Ka++++ A+eYIk Lq Migut.L01878.1.p 28 NIASERKRRKKLNETLYALRSVVPNI-----TKMDKASTVRDAIEYIKLLQ 73 5578*********************7.....7****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.507 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-17 | 25 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.92E-13 | 26 | 77 | No hit | No description |
Pfam | PF00010 | 2.6E-11 | 28 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-15 | 29 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-14 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MKYTCGCSYF EYESSSPEGT HVSSASKNIA SERKRRKKLN ETLYALRSVV PNITKMDKAS 60 TVRDAIEYIK LLQDEERIIQ SQISEMESII SMSSLLPNNN NNNNINNIEN DDQEAETYFC 120 MPKKRARMEF SDESNPIEVL ELSISSMGEK NVMVSLTCSN RRDTIIKLCE AFESLNLKII 180 TSTINHFSGK LFKTVFIQSD EEEKDVLRVN IEAAIAALNN PHSPISS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 38 | ERKRRKKL |
2 | 121 | 127 | PKKRARM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01878.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012828748.1 | 2e-82 | PREDICTED: transcription factor bHLH35 | ||||
TrEMBL | A0A022RIK6 | 1e-164 | A0A022RIK6_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L01878.1.p | 1e-164 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 3e-60 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01878.1.p |