PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01823.1.p
Common NameLOC105956807, MIMGU_mgv1a010361mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YA
Protein Properties Length: 315aa    MW: 34858 Da    PI: 9.6272
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01823.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA87.22.4e-27163217358
         CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       p+YVNaKQy++I++RR++Rak+e  +++  k+rkpy h SRh hA+rRpRg+gGrF
  Migut.L01823.1.p 163 PIYVNAKQYNAIMRRRKSRAKAEIANQV-LKTRKPYQHFSRHLHAKRRPRGNGGRF 217
                       9***************************.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.0E-28159220IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.355160220IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-20163185IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.7E-24163217IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860165185IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-20194217IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNSHTVFFKE NEGVAPNHLN VSLSELPRWI GLGSQPAAAV YGDPFVQSKL TSLELPAGGR  60
NQFTVAKDTD NQQGLEKGIT TQFTLFSGDC RTSAENSAKT NLQKVFSATM EDQWNFKLGF  120
GQPPVCGQYP YGEQYYGLYS STYGTQIEGR IMLPLNMPSD VGPIYVNAKQ YNAIMRRRKS  180
RAKAEIANQV LKTRKPYQHF SRHLHAKRRP RGNGGRFLNT KNSNTTSEND NGKNNDKEDK  240
QQYSHLSESQ ISEVIMCDEL VINSKGKNGN TSPGPEVTSH LFNQSFGINH IAFQSFTNTG  300
IGIAMANAGN YLKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-15163232473NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179MRRRKS
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01823.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836162.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
RefseqXP_012836163.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
SwissprotQ9M9X48e-39NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A022RE770.0A0A022RE77_ERYGU; Uncharacterized protein
STRINGMigut.L01823.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.25e-40nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]