PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01808.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 324aa    MW: 35447.8 Da    PI: 6.5097
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01808.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.21.2e-3185194199
                       EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                       f+k ltpsdv+k++rlv+pk++ae++           g   e++  l++ede g+sW+++++y+++s++yvlt+GW++Fvk+++L++gD v+F
  Migut.L01808.1.p  85 FEKSLTPSDVGKLNRLVIPKQHAEKYlplnngggsggGDTGEKGLVLSFEDEVGKSWRFRYSYWNSSQSYVLTRGWSRFVKEKRLDAGDAVLF 177
                       99******************************99997545557889*********************************************** PP

                       EE-SSSEE..EEEEE-S CS
                B3  83 kldgrsefelvvkvfrk 99 
                        ++ ++ ++l+++++r+
  Migut.L01808.1.p 178 LRHPEDVGRLFIGWRRR 194
                       *88779999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-3877195IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-3080194IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-2883183No hitNo description
PfamPF023621.4E-2885195IPR003340B3 DNA binding domain
SMARTSM010191.0E-2585195IPR003340B3 DNA binding domain
PROSITE profilePS5086314.45285195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSINQYYPSD WWSYPIPNSA AAAPLHLNHG TSAAAFCSQS AAFCYSHNNN ETEEESPEET  60
NSTASRPPEL GQHEVVDEIP KEPLFEKSLT PSDVGKLNRL VIPKQHAEKY LPLNNGGGSG  120
GGDTGEKGLV LSFEDEVGKS WRFRYSYWNS SQSYVLTRGW SRFVKEKRLD AGDAVLFLRH  180
PEDVGRLFIG WRRRNSGGGG GGGQEISSVA SASANVRRTP PAGGGGGGWS RLVYNNPAGH  240
PYLISQYYQD YCSSSLSYHY QPPNDCPHAA DADRKETAAA SGNLKRVRLF GVNLDQWESS  300
SSEPLSSPEG SSMARTHYHP YHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-46811944113B3 domain-containing transcription factor NGA1
5os9_B2e-46811944113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01808.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836146.10.0PREDICTED: B3 domain-containing protein At2g36080
RefseqXP_012836147.10.0PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ9FNI31e-57Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A022RID01e-178A0A022RID0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-52B3 family protein