PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01743.1.p | ||||||||
Common Name | LOC105956737, MIMGU_mgv1a005731mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Trihelix | ||||||||
Protein Properties | Length: 474aa MW: 51461.8 Da PI: 6.9793 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59.2 | 1e-18 | 90 | 176 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea++e+ +l+rg+l++ +Weev++ + r++ +s +qCk+k +nl+kryk ++++ +++ s s++p+++q+e Migut.L01743.1.p 90 EWSDTAIACLLEAYSEKFVQLNRGNLRGRDWEEVAATVseRSENQMKSVEQCKNKVDNLKKRYKLERHRLSNG-GVSASHWPWYKQME 176 5*************************************555556688************************99.566679*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.4E-22 | 88 | 178 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 8.4E-66 | 222 | 466 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 32.262 | 232 | 467 | IPR015963 | Uridylate kinase, bacteria |
SuperFamily | SSF53633 | 2.62E-52 | 233 | 466 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 3.48E-113 | 235 | 467 | No hit | No description |
Pfam | PF00696 | 1.7E-16 | 236 | 446 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0046939 | Biological Process | nucleotide phosphorylation | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MASCDDDFSL IDDHQNPNSA QPSTATATHT PPYQINHYDQ DSDPFDSEPD PHSISGKRLI 60 DRDDIHSGTS KRTRLPSSGG SGDYRKDREE WSDTAIACLL EAYSEKFVQL NRGNLRGRDW 120 EEVAATVSER SENQMKSVEQ CKNKVDNLKK RYKLERHRLS NGGVSASHWP WYKQMEQIVG 180 SSLAAKAAAE EEKSSGGGAP SYPAKQPKRL GAVTSSPVGQ ISSMKLKPTN TLRWRRVVFR 240 ISGSALAGSP PTNIDPKVAM MIAREVSMAC HVGVEVAIVV GGRNFFCGDT WVTSTGFDRC 300 TAYQIGMMAT VMNSVLLQSS LEKLGVHTRV QSAFSMPEIS EPYSRQRAIR HLEKGRVVIF 360 GGIGAGTGNP LFSTDTAAAL RASDIHADVV LKGANADGVY VCDSRNDSLA AEHISFRELA 420 NRGAFPMDMM AVTVCEENGI PVGVFNIHEP GNISRALCGE RVGLLIDQTG PIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 6e-58 | 232 | 466 | 7 | 239 | Uridylate kinase |
3ek5_B | 6e-58 | 232 | 466 | 7 | 239 | Uridylate kinase |
3ek5_C | 6e-58 | 232 | 466 | 7 | 239 | Uridylate kinase |
3ek5_D | 6e-58 | 232 | 466 | 7 | 239 | Uridylate kinase |
3ek5_E | 6e-58 | 232 | 466 | 7 | 239 | Uridylate kinase |
3ek5_F | 6e-58 | 232 | 466 | 7 | 239 | Uridylate kinase |
3ek6_A | 6e-58 | 232 | 466 | 7 | 239 | Uridylate kinase |
3ek6_B | 6e-58 | 232 | 466 | 7 | 239 | Uridylate kinase |
3ek6_C | 6e-58 | 232 | 466 | 7 | 239 | Uridylate kinase |
3ek6_D | 6e-58 | 232 | 466 | 7 | 239 | Uridylate kinase |
3ek6_E | 6e-58 | 232 | 466 | 7 | 239 | Uridylate kinase |
3ek6_F | 6e-58 | 232 | 466 | 7 | 239 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01743.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836082.1 | 0.0 | PREDICTED: uncharacterized protein LOC105956737 | ||||
TrEMBL | A0A022RI71 | 0.0 | A0A022RI71_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L01743.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8728 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01743.1.p |
Entrez Gene | 105956737 |