PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01657.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | AP2 | ||||||||
Protein Properties | Length: 302aa MW: 33165.6 Da PI: 6.6281 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.6 | 1.5e-13 | 73 | 122 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k Migut.L01657.1.p 73 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCS 122 89********.7******5553..2.26**********99**********9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.5E-9 | 1 | 44 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.864 | 1 | 38 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-9 | 3 | 39 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-11 | 3 | 39 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-17 | 73 | 133 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.70E-25 | 73 | 133 | No hit | No description |
Pfam | PF00847 | 4.5E-9 | 73 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-31 | 74 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-16 | 74 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.237 | 74 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-6 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-6 | 113 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LDADINFNAS DYDDDLQQMK SLGKEEFVHI 60 LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEIEA ARAYDKAAIK 120 CSGREAVTNF DASTYEEELS TEADIGAPAG DYHDLDLNLG IAPPNRANGQ TQNIEMGSFQ 180 IYRGSNNLPE NGPKGSASAS MEHLSHGHRN VYEAPPSFHP IYKGTAEKIM EVDSPANWGW 240 KTHDNFHVNH PLPLLSTAAS SGFATTSSSG AIHQSPFNTI SQTHYPIPLS NYNNGSHYWF 300 G* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01657.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ784455 | 1e-127 | KJ784455.1 Salvia miltiorrhiza AP4/EREBP Transcription Factors (WRI4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835987.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like | ||||
Swissprot | B8AXC3 | 2e-84 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A022RHZ7 | 0.0 | A0A022RHZ7_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-80 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01657.1.p |