PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01470.1.p
Common NameMIMGU_mgv1a022522mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TALE
Protein Properties Length: 142aa    MW: 16630.8 Da    PI: 6.6793
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-09851182255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +yp++ ++  LA+++gL+++q+ +WF N+R ++
  Migut.L01470.1.p  85 WPYPTECDKIALAESTGLDQKQINNWFINQRKRH 118
                       59*****************************985 PP
2ELK21.84.6e-083959222
               ELK  2 LKhqLlrKYsgyLgsLkqEFs 22
                      LK+ L r Y+++++sLk+EFs
  Migut.L01470.1.p 39 LKEKLVRMYGSHISSLKHEFS 59
                      999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512138.9753858IPR005539ELK domain
SMARTSM011882.3E-43859IPR005539ELK domain
PfamPF037891.6E-53859IPR005539ELK domain
PROSITE profilePS5007112.66558121IPR001356Homeobox domain
SuperFamilySSF466891.38E-1959133IPR009057Homeodomain-like
SMARTSM003892.9E-1160125IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-2863121IPR009057Homeodomain-like
CDDcd000866.07E-1170121No hitNo description
PfamPF059202.7E-1778117IPR008422Homeobox KN domain
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MIEVDDVSPW SDEELSKEVD TDNIENGELT TKSSEEGQLK EKLVRMYGSH ISSLKHEFSK  60
KKKKGKLPKE ARQTLLQWWN LHCKWPYPTE CDKIALAEST GLDQKQINNW FINQRKRHWK  120
SPENMQLAVF DNLSPHFFLQ D*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01470.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848063.13e-90PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-45KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A022QMG15e-98A0A022QMG1_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-41KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]