PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01462.1.p | ||||||||
Common Name | MIMGU_mgv1a019162mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | YABBY | ||||||||
Protein Properties | Length: 214aa MW: 23705.7 Da PI: 5.0729 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 182.2 | 2.8e-56 | 9 | 180 | 3 | 166 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekees 91 v+ eqvCyvqC+fC+t+l+vsvP +sl +vvtvrCGhCts+lsvn+ ka +l + ++ +++l + + e +ee + + ++ + ++ Migut.L01462.1.p 9 VDIGQEQVCYVQCGFCSTVLLVSVPCSSLTMVVTVRCGHCTSILSVNMVKACfvplHLFTPINNQQQELMVQPKWEVCSEEVAANDKKLAANN 101 556689*****************************************9998766665555555444444444334444444444444444444 PP YABBY 92 astsvssekl...senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 ++t +s + ++++++++ ++ + +PPek+qr+Psayn fikeei+r+k + P+++h++af aaaknWah P+ Migut.L01462.1.p 102 NNTCSPSLCFssdEDDDEDSINHINGvIHKPPEKKQRAPSAYNHFIKEEIKRLKIEYPNMTHKQAFGAAAKNWAHCPQS 180 444444444443233444456666665679***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.3E-55 | 13 | 179 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.24E-8 | 125 | 180 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.3E-5 | 131 | 180 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSSELDNSVD IGQEQVCYVQ CGFCSTVLLV SVPCSSLTMV VTVRCGHCTS ILSVNMVKAC 60 FVPLHLFTPI NNQQQELMVQ PKWEVCSEEV AANDKKLAAN NNNTCSPSLC FSSDEDDDED 120 SINHINGVIH KPPEKKQRAP SAYNHFIKEE IKRLKIEYPN MTHKQAFGAA AKNWAHCPQS 180 VNKGGEVLHS CNERDNDKMA INYSDDVDNE VIN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01462.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848044.1 | 1e-156 | PREDICTED: axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 1e-54 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A022QKJ1 | 1e-155 | A0A022QKJ1_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L01462.1.p | 1e-158 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 5e-48 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01462.1.p |
Publications ? help Back to Top | |||
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