PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01404.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Trihelix | ||||||||
Protein Properties | Length: 251aa MW: 28805.2 Da PI: 4.3442 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.2 | 3.3e-16 | 118 | 161 | 43 | 87 |
trihelix 43 ferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 ++s+ Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Migut.L01404.1.p 118 HQKSARCCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 161 4799************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48371 | 1.96E-5 | 24 | 59 | IPR016024 | Armadillo-type fold |
Pfam | PF13837 | 2.3E-10 | 116 | 162 | No hit | No description |
SuperFamily | SSF48371 | 1.96E-5 | 125 | 148 | IPR016024 | Armadillo-type fold |
SuperFamily | SSF48371 | 1.96E-5 | 198 | 228 | IPR016024 | Armadillo-type fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005488 | Molecular Function | binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MELDMDTRIN IGCSAGVYMS AAKELIEKLQ NAIAEAKTEL EKYFNVSALL KHMPTQPPQP 60 VKYMIEKGNY GDEETLTVEK MFMYMEIDRI IAAMYTQHKE QVAKVHQMTN LANYLLTHQK 120 SARCCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD AIYRERGSKS DVVSFPGYGL 180 NPDDNNPMML PPPIMARPEQ FQDNESDQDD EEDDVDGDED DEDDEEDEAQ CFEIVINKQQ 240 SSVTTTNAAD * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01404.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182562 | 1e-162 | AC182562.2 Erythranthe guttata clone MGBa-38M20, complete sequence. | |||
GenBank | AC182565 | 1e-162 | AC182565.2 Erythranthe guttata clone MGBa-47F23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853467.1 | 8e-60 | PREDICTED: LOW QUALITY PROTEIN: trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A022QRB4 | 1e-115 | A0A022QRB4_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.L01404.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-24 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01404.1.p |