PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01262.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 238aa MW: 27063.5 Da PI: 7.8577 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.5e-09 | 13 | 37 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 g W++Ia++++ +Rt++++k++w+++l Migut.L01262.1.p 13 G-WSAIASHLP-KRTDNEIKNYWNTHL 37 5.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.892 | 1 | 41 | IPR017930 | Myb domain |
CDD | cd00167 | 5.45E-7 | 6 | 37 | No hit | No description |
SuperFamily | SSF46689 | 2.18E-8 | 10 | 49 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.9E-8 | 12 | 37 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-13 | 13 | 51 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVPSMLHPVK NTGWSAIASH LPKRTDNEIK NYWNTHLKKR LTKMGIDPTT HKPMSHALIS 60 QPKDLSHMAQ WETARLEAES RIVRESKLAL SNPNPNPNYY NYHYHYYNKT ATAAAAPPPP 120 PPPPPPRPPC LDILKVWQGM TWTNPRKDHT MVNNNNNNNR GFTADHGMLM ANYTPAPPLS 180 DGLTIHESAF LNDGRETSHE DDQQIKEVIF FEDNKVTDYW SNILNVVNSS IDLHHCF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01262.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ202270 | 0.0 | HQ202270.1 Mimulus guttatus isolate A pop-variant IM62 MYB transcription factor MIXTA-like 3 protein (MYBML3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847600.1 | 1e-144 | PREDICTED: uncharacterized protein LOC105967546 | ||||
TrEMBL | A0A022QJ89 | 1e-145 | A0A022QJ89_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 1e-32 | myb domain protein 106 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01262.1.p |