PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01093.1.p
Common NameMIMGU_mgv1a018051mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 314aa    MW: 34710.4 Da    PI: 7.882
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05136155120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C+ C+k+F+r  n++ H+
  Migut.L01093.1.p 136 FSCSVCTKTFNRYNNMQMHM 155
                       89*****************9 PP
2zf-C2H213.80.00017221243123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C +C+k+F  + + ++H +++
  Migut.L01093.1.p 221 FECRKCSKPFAVRGDWRTHEKNC 243
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575115No hitNo description
SuperFamilySSF576673.31E-5132159No hitNo description
Gene3DG3DSA:3.30.160.602.6E-5136155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.24136158IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512136163IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SMARTSM00355180184216IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.16E-5202241No hitNo description
Gene3DG3DSA:3.30.160.601.4E-4207241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035587221241IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MHTRISLPYC VSTSCDDEEE EDDGDWSTLL SLGPPGQQLH HRSQQNHHHH SFKQRRQGQS  60
QNLQRNPNSS GGGGGGQNGV TVALHIGPPP SSTESASPSA AAAVAKENPS SGVGVGHLGQ  120
YWIPTPSQIL VGPTQFSCSV CTKTFNRYNN MQMHMWGHGS EYRKGPESLR GTKPASSILR  180
LPCYCCAEGC KNNIEHPRSK PLKDFRTLQT HYKRKHGAKP FECRKCSKPF AVRGDWRTHE  240
KNCGKLWFCI CGSDFKHKRS LKDHVRAFGQ GHAPHTENLY TSSYGAVQYG RRGVQVAGEL  300
DDDEDEEDDD EEG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01093.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833165.10.0PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-116ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A022RM480.0A0A022RM48_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-110C2H2-like zinc finger protein