PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.L00835.1.p

Common Name

LOC105952272, MIMGU_mgv11b022883mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

M-type_MADS

Protein Properties

Length: 159aa MW: 19203 Da PI: 6.6342

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L00835.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.6	5.9e-12	6	50	3	47
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 i n+s+r+ tf k + KA+ELS+LC++eva+ii + +ly Migut.L00835.1.p 6 IPNESKRNETFKKKTVRLVNKANELSTLCGVEVAIIIHKNGRRLY 50 889**********************************87777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0016	1	55	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.605	1	56	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.53E-14	2	93	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.88E-11	4	53	No hit	No description
Pfam	PF00319	4.2E-13	6	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MKHELIPNES KRNETFKKKT VRLVNKANEL STLCGVEVAI IIHKNGRRLY DLGQDNAMLW 60 PSPPIFSERL HKFLNYPDFV TRLRMDKHEK FMEQITEEER ENVSKWERRC ELQESRQLMN 120 ELMKQDHIDD YFHELELYQL DGLNTFVNEM LKELERHR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L00835.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012831259.1	1e-114	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A022RTW6	1e-113	A0A022RTW6_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65330.1	5e-11	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Migut.L00835.1.p
Entrez Gene	105952272