PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00643.1.p
Common NameMIMGU_mgv1a022972mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 124aa    MW: 14756 Da    PI: 10.2883
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00643.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.32.6e-151149341
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                      i n+s+r+ tf k   g+ KKA+ELS+LC++eva+ii  
  Migut.L00643.1.p 11 IPNESKRNETFEKKTDGLVKKANELSTLCGVEVAIIIHK 49
                      88**********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-9160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.96161IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-10323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-185101IPR002100Transcription factor, MADS-box
PfamPF003192.9E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MASARTKHEL IPNESKRNET FEKKTDGLVK KANELSTLCG VEVAIIIHKQ RHRRYDLGED  60
NAMLWPSPPI FRESLHKFLD YSDFKKRRRM VKHEKFTEKI TKKERENVSK WETRCELQES  120
RQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00643.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846946.12e-87PREDICTED: MADS-box transcription factor 56-like, partial
TrEMBLA0A022QPZ91e-85A0A022QPZ9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-13M-type_MADS family protein