PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.L00605.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

FAR1

Protein Properties

Length: 484aa MW: 56063.8 Da PI: 9.5498

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L00605.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.4	8.9e-27	12	102	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Y++YA++vGF +++++++ s+ +++ + ++ Cs+eg++++++++ t++++rt++et++gCka+++v++++ gkw+vtk+ +HnHel Migut.L00605.1.p 12 CYKAYARRVGFGTKVNHTRLSQSDKSLIGVDYACSREGQSKQKDQEkTKQSKRTQSETKIGCKAMMRVSLNQdIGKWVVTKFIIDHNHELY 102 7***********************************999887775888999***************99*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-25	12	102	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-35	159	253	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.375	440	476	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.7E-7	440	473	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.9E-4	451	478	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MVFDSALDAK TCYKAYARRV GFGTKVNHTR LSQSDKSLIG VDYACSREGQ SKQKDQEKTK 60 QSKRTQSETK IGCKAMMRVS LNQDIGKWVV TKFIIDHNHE LYTPRTTSLL RGHRKITTAQ 120 KNIINVLNEA GIPATKIMSV LSHGSDIRSR LAYRYFGDVV TFDATYLTDR YGMPFVPFTG 180 VNHHHQSIMF GCALLVNETI SSYVWLLRTW LEAMSGRAPS VIITDEDKSM RAAITEVLPN 240 TTHRLCMWHI LQKVPEYLAH IFNKYPSFQG EFRHCIHETI TIQEFEHEWV ELIKKYELQE 300 NDWLTKLYGQ RERWIPAYLR GIFCAGMSTT QRSESMNNFF KGFVRSSTLV SDFVHQYEKA 360 LNSRYIKEKE KDLKTKNTKP ALKTCYKIEA EAAEIYTRKL FLMFREELFS SQKYMSSKHY 420 LDGFKKCYHV MPIGEKKPTY EVVIDISEKN AICSCHMFEF VGILCRHILA IFVKKSLTNS 480 LPH*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MVFDSALDAK TCYKAYARRV GFGTKVNHTR LSQSDKSLIG VDYACSREGQ SKQKDQEKTK  60
QSKRTQSETK IGCKAMMRVS LNQDIGKWVV TKFIIDHNHE LYTPRTTSLL RGHRKITTAQ  120
KNIINVLNEA GIPATKIMSV LSHGSDIRSR LAYRYFGDVV TFDATYLTDR YGMPFVPFTG  180
VNHHHQSIMF GCALLVNETI SSYVWLLRTW LEAMSGRAPS VIITDEDKSM RAAITEVLPN  240
TTHRLCMWHI LQKVPEYLAH IFNKYPSFQG EFRHCIHETI TIQEFEHEWV ELIKKYELQE  300
NDWLTKLYGQ RERWIPAYLR GIFCAGMSTT QRSESMNNFF KGFVRSSTLV SDFVHQYEKA  360
LNSRYIKEKE KDLKTKNTKP ALKTCYKIEA EAAEIYTRKL FLMFREELFS SQKYMSSKHY  420
LDGFKKCYHV MPIGEKKPTY EVVIDISEKN AICSCHMFEF VGILCRHILA IFVKKSLTNS  480
LPH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L00605.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018848293.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A022QK37	0.0	A0A022QK37_ERYGU; Uncharacterized protein
STRING	Migut.L00605.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-114	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Migut.L00605.1.p