PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L00459.1.p | ||||||||
Common Name | MIMGU_mgv1a025765mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 300aa MW: 34187.4 Da PI: 5.12 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll + vk++G g W+ I+ + g++R++k+c++rw++yl Migut.L00459.1.p 12 KGAWTKEEDFLLTKFVKKHGEGKWHQIPIKTGLKRCRKSCRLRWLNYL 59 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.3 | 1.9e-14 | 65 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E +l +++ k+lG++ W++Ia +++ gRt++++k++w+++l Migut.L00459.1.p 65 RGPFSDDEIDLVLRLRKLLGNR-WSLIAGRIP-GRTANDVKNYWNTHL 110 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.248 | 7 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-27 | 9 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 12 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.18E-10 | 14 | 59 | No hit | No description |
PROSITE profile | PS51294 | 18.114 | 64 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 7.5E-15 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-13 | 65 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 66 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.13E-9 | 67 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MSDSTPVTSV RKGAWTKEED FLLTKFVKKH GEGKWHQIPI KTGLKRCRKS CRLRWLNYLK 60 PGRKRGPFSD DEIDLVLRLR KLLGNRWSLI AGRIPGRTAN DVKNYWNTHL HKKLLLSISD 120 DDDDDVADDD DDVAEDVEGD DVAGGEGDKT LKKPEHYYEI VKPRPWSFSK MANSNNNNNN 180 NNNNNNNNNN NNNNNNNNNN NNNNPTTDND NNNIEICKPK ICSDKNIDPY DKAASLLVES 240 PNEIAFQGFR EGSTWNMLTW QEEERSNFGY GNDNSAPDAA LDGWSDLSDL HMGIWDFWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-19 | 12 | 114 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L00459.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012832530.1 | 2e-96 | PREDICTED: trichome differentiation protein GL1-like | ||||
Swissprot | Q9FNV9 | 2e-53 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A022RNF2 | 0.0 | A0A022RNF2_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-54 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L00459.1.p |
Publications ? help Back to Top | |||
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