PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L00428.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | AP2 | ||||||||
Protein Properties | Length: 584aa MW: 64456.6 Da PI: 6.7172 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.2e-16 | 281 | 340 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Migut.L00428.1.p 281 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 340 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46.6 | 8.5e-15 | 383 | 434 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Migut.L00428.1.p 383 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 434 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.5E-13 | 281 | 340 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-16 | 281 | 349 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.38E-20 | 281 | 349 | No hit | No description |
SMART | SM00380 | 9.2E-28 | 282 | 354 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.782 | 282 | 348 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-15 | 282 | 348 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 283 | 294 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-10 | 383 | 434 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.11E-24 | 383 | 441 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-17 | 383 | 443 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-33 | 384 | 448 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.834 | 384 | 442 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-18 | 384 | 442 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 424 | 444 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MNNINWLLGF SLSAPTMDDT SSSSHHHHHQ EGDDHQPSST VVSGTVPSSY NYPGINYYGE 60 NSSSSLTMMP IKSDGSLCLM EAFHTSQPPA KLEDFFSTGA TMGAHPHHYE RGGMALSLDS 120 TYYNQTHENE NNKTIINGQD FVGGHSQENS QQIIQLHQDQ YPHYNYQALL LQGGGDDHHR 180 SKEADQHPSM AADDEIGGGG GAKNWVSRNC SPGNVHAALM AENGVESGSA GGNGDLQSLS 240 LTMSSQDSTM MALEKKKRGL PENQKQIVHR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW 300 DNSCKKEGQS RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFAVE NYRQELEEMN 360 SMNRQEYVAH LRRRSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE 420 AAEAYDVAAI KFRGLNAVTN FVTSKYDVER IMESNTLLSG EMARRNTDVT TLTVSHPTDD 480 VALYEPSHHQ KPALEYFNGS SSSVSGSVVI DPQVWDGSGR STAGRLSGGS SLVTSLSSSR 540 EGSPDGNINN SRSMQFGSEF SWIQSTAQMR PQVPLFYAWA DAS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L00428.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012832626.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-148 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A022RR04 | 0.0 | A0A022RR04_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-139 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.L00428.1.p |