PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00396.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 460aa    MW: 49323.6 Da    PI: 5.0699
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00396.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.81.1e-83207457113374
              GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204
                       H +   ++ G+QWpaLlqaLa Rp+g+p  +R+Tg                ++L ++A++++++fe++ +va++l+dl+ ++++vk+gEa+aV
  Migut.L00396.1.p 207 HTLMACAEAGMQWPALLQALALRPRGAPlAFRLTGGR--------------WKLDQLAQTINIEFEYKGVVANSLADLDASMFDVKEGEAVAV 285
                       555555789***************999989****954..............6***************************************** PP

              GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.....lpreseerikvErellgr 292
                       n++++lh+ll++++++e+    vLk+v++l+P +++vveqea+hn++ Fl+rf e+l+yys+l+dsle+       ++ s++++++++++lgr
  Migut.L00396.1.p 286 NSIFELHQLLAKTGAIEK----VLKFVRELKPAILTVVEQEANHNGAVFLDRFNESLHYYSTLYDSLESCgggggDGAVSDQDKVMSEVYLGR 374
                       ******************....*********************************************87644444344569************ PP

              GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       +i+nvvaceg er+erhetl++Wr+rl+ aGF+pv+l+++a+kqa++ll+ ++ + gy vee++g+l+lgW++rpL+++SaW+
  Migut.L00396.1.p 375 QICNVVACEGVERVERHETLGQWRARLGWAGFGPVNLGSNAYKQASMLLALFAgGGGYVVEENNGCLMLGWHTRPLIATSAWK 457
                       *****************************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011297.8E-2733103No hitNo description
PfamPF120419.0E-273397IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098531.3981436IPR005202Transcription factor GRAS
PfamPF035143.9E-81207457IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MKRDHMNEEN FSSSGSCSSS AGKAKMWPSE AEDELFAVLG YKVNTSDMAE VALKIKQLEE  60
AMGGGGLSQL ASDTVHYNPS DLSSWLDSMI SGLNPLPEFG SSSDPFLESS TITTADNGGG  120
GGSLAAQMVV DSGFGSDLIS IPGKAVYPIT QPQQHHHQPQ AKKLKTSPYS VNTAASTSTE  180
PVFARPAEST RSLVLVDSQE NGVRLVHTLM ACAEAGMQWP ALLQALALRP RGAPLAFRLT  240
GGRWKLDQLA QTINIEFEYK GVVANSLADL DASMFDVKEG EAVAVNSIFE LHQLLAKTGA  300
IEKVLKFVRE LKPAILTVVE QEANHNGAVF LDRFNESLHY YSTLYDSLES CGGGGGDGAV  360
SDQDKVMSEV YLGRQICNVV ACEGVERVER HETLGQWRAR LGWAGFGPVN LGSNAYKQAS  420
MLLALFAGGG GYVVEENNGC LMLGWHTRPL IATSAWKIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-36206459130381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00396.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851504.11e-156PREDICTED: DELLA protein GAI1-like
SwissprotQ8S4W71e-128GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A022R0L51e-178A0A022R0L5_ERYGU; Uncharacterized protein
STRINGMigut.L00396.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-92GRAS family protein