PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.L00314.1.p

Common Name

LOC105961285, MIMGU_mgv1a011498mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 280aa MW: 30786.8 Da PI: 7.3573

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L00314.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.6	1.1e-29	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++s++yeA+ r+ +P+ G+vg++++++++l+ Migut.L00314.1.p 4 SCNGCRVLRKGCSESCSIRPCLdwiktPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSMLYEACGRIVNPIFGSVGLMWSGSWHLC 96 6****************************************************************************************** PP DUF260 89 qlkaelallke 99 q+++e++l ++ Migut.L00314.1.p 97 QSAVEAVLNGA 107 **9988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	9.2E-88	1	264	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.247	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLDWIKT PESQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSML YEACGRIVNP IFGSVGLMWS GSWHLCQSAV EAVLNGAPIT QIATDVAVEK 120 NGPPLKAYDI RHVSKEDNNN LSGSDDLHRV RTRSRRFKRS GAKSKRSRVC AGSVEEECVN 180 NEVDRSPSHE SSLSHQSEAA DLVVERRRRR SESLGSAETA EPEADRTDDD EEIELDLTLG 240 FEPIKRCPKP KELKPSEAGC KSAGVCGMEL GLDYPHPRD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L00314.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012840975.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-95	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A022R367	0.0	A0A022R367_ERYGU; Uncharacterized protein
STRING	Migut.L00314.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-85	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Migut.L00314.1.p
Entrez Gene	105961285