PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00302.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 369aa    MW: 41738.4 Da    PI: 9.5109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00302.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16453148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                      r+rW +eEd ll  +vkq+G++ W++I+++mg  + R +k+c +rw +yl
  Migut.L00302.1.p  4 RQRWQPEEDALLRAYVKQYGPKEWSLISQRMGktLDRDPKSCLERWKNYL 53
                      89**********************************************97 PP
2Myb_DNA-binding33.11.3e-1059103147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +g+ T++E+ l + + +++G++ Wk+Ia++++ gRt+k +  +w  +
  Migut.L00302.1.p  59 KGSLTADEQHLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103
                       5778******************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.024157IPR017930Myb domain
SMARTSM007173.5E-14355IPR001005SANT/Myb domain
SuperFamilySSF466893.56E-22498IPR009057Homeodomain-like
CDDcd001679.26E-10653No hitNo description
Gene3DG3DSA:1.10.10.604.0E-21660IPR009057Homeodomain-like
PfamPF139212.8E-14768No hitNo description
SMARTSM007176.1E-858106IPR001005SANT/Myb domain
PROSITE profilePS5129417.19558108IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-1461108IPR009057Homeodomain-like
CDDcd001674.56E-563104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MKDRQRWQPE EDALLRAYVK QYGPKEWSLI SQRMGKTLDR DPKSCLERWK NYLKPGIKKG  60
SLTADEQHLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKH LQRSSSHHHL  120
DYGITPPGSS AAGGGAAASP EGKYDHILET FAEKYVQPNL FSSFQSPTSP GIIMPAAAAV  180
SNLTLPDPPP NSGAALPPWL NMNSTPTTTS SLTSSSSSTT PSPSVSLTLS PSEAAAVVVD  240
PIQPLANRFN FPIQQVGILI QHCKELEEGR ENLMRHKKEA TWRLSRVEQQ LEAEKARRKR  300
EKTEEVEERI RRLREEEAAY VSRMEAEYRE EMKGLRRDAE AKEDKLMEEW CSNHVKLEKL  360
LQQIENFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-15792789MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-14792789C-Myb DNA-Binding Domain
1msf_C1e-14792789C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296301RRKREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00302.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847889.10.0PREDICTED: protein rough sheath 2 homolog, partial
TrEMBLA0A0K1SBK81e-171A0A0K1SBK8_REHGL; R2R3-MYB protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29332445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.19e-83MYB family protein