PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00250.1.p
Common NameLOC105971199, MIMGU_mgv1a003589mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 577aa    MW: 62406.5 Da    PI: 5.7018
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.42e-1362125741374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       lv++L++cAeav++++++la+al++++  la ++  +m+++a+yf+eALa+r++r    ly    p++ +e  s+ +    + f+e++P+lkf
  Migut.L00250.1.p 212 LVHTLMACAEAVQKENFKLAEALVKKIGSLAVSQPGSMRKVATYFAEALARRIYR----LY----PTNPQE--SAFTDLLETHFYETCPYLKF 294
                       689****************************************************....44....333332..3344444456********** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       +h+taNqaIlea++g++rvH+iD++i+qG+QWpaLlqaLa Rp+gpp++R+Tgvg+   +s++ l+e+g +La++A++++++fe++ +va++l
  Migut.L00250.1.p 295 AHFTANQAILEAFAGQNRVHVIDLGIKQGMQWPALLQALALRPGGPPRFRLTGVGP---SSHDHLNEVGYKLAQLAQTINIEFEYKGVVANSL 384
                       ********************************************************...589******************************* PP

              GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak..... 274
                       +dl+ ++++vk+gEa+aVn++++lh+ll++++++e+    vLk+v++l+P +++vveqea+hn++ Fl+rf e+l+yys+l+dsle+      
  Migut.L00250.1.p 385 ADLDASMFDVKEGEAVAVNSIFELHQLLAKTGAIEK----VLKFVRELKPAILTVVEQEANHNGAVFLDRFNESLHYYSTLYDSLESCggggg 473
                       ************************************....*********************************************87644444 PP

              GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                        ++ s++++++++++lgr+i+nvvaceg er+erhetl++Wr+rl+ aGF+pv+l+++a+kqa++ll+ ++ + gy vee++g+l+lgW++rp
  Migut.L00250.1.p 474 DGAVSDQDKVMSEVYLGRQICNVVACEGVERVERHETLGQWRARLGWAGFGPVHLGSNAYKQASMLLALFAgGGGYVVEENNGCLMLGWHTRP 566
                       344569*****************************************************************9999****************** PP

              GRAS 367 LvsvSaWr 374
                       L+++SaW+
  Migut.L00250.1.p 567 LIATSAWK 574
                       *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.2E-2638102IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011295.9E-2738108No hitNo description
PROSITE profilePS5098566.368186553IPR005202Transcription factor GRAS
PfamPF035146.8E-134212574IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MKRDHMNEEN FSSSGSCSSS AGKAKMWSSE AEDSAGFDEL FAVLGYKVNT SDMAEVALKI  60
KQLEEAMGGG GLSQLASDTV HYNPSDLSSW LDSMISGLNP VPEFGSSSDP FLDSSTITTA  120
DNGGGSLAAQ MVVDSDFGSD LISIPGKAVY PITQPPPPPQ QHHHQPQAKK LKTSPYSVNP  180
AASTNTEPVF ARPAESTRSL VLVDSQENGV RLVHTLMACA EAVQKENFKL AEALVKKIGS  240
LAVSQPGSMR KVATYFAEAL ARRIYRLYPT NPQESAFTDL LETHFYETCP YLKFAHFTAN  300
QAILEAFAGQ NRVHVIDLGI KQGMQWPALL QALALRPGGP PRFRLTGVGP SSHDHLNEVG  360
YKLAQLAQTI NIEFEYKGVV ANSLADLDAS MFDVKEGEAV AVNSIFELHQ LLAKTGAIEK  420
VLKFVRELKP AILTVVEQEA NHNGAVFLDR FNESLHYYST LYDSLESCGG GGGDGAVSDQ  480
DKVMSEVYLG RQICNVVACE GVERVERHET LGQWRARLGW AGFGPVHLGS NAYKQASMLL  540
ALFAGGGGYV VEENNGCLML GWHTRPLIAT SAWKIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6920757614381Protein SCARECROW
5b3h_A3e-6920757613380Protein SCARECROW
5b3h_D3e-6920757613380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851504.10.0PREDICTED: DELLA protein GAI1-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A022QCD60.0A0A022QCD6_ERYGU; Uncharacterized protein
STRINGMigut.L00250.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein